Gene Information

Name : CLD_1431 (CLD_1431)
Accession : YP_001782744.1
Strain : Clostridium botulinum Okra
Genome accession: NC_010516
Putative virulence/resistance : Virulence
Product : exopolysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 3356232 - 3358097 bp
Length : 1866 bp
Strand : -
Note : identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993

DNA sequence :
ATGAGAAAAGATAGGGAATTGATTCTTTATGATATATTATTAATAATTTTATCATTATATTTAGCAATATTATTAAGATT
CGATTTTGGTATGGCTTCTATGGCTTCGGAATTTAAAAAATATATGATATTTTTTAAGTTATCAGTAATTCCAGTTATAA
TAATAATCTTATTTTTTAATAAAATATTTAATTTATATAGTAGTATATGGAAATATGCTTCAGTAGAAGAACTTATGTCT
ATAATTTATTCAGTTTCTATATCTAATATTATATTCATAATTTATAGTTATTTTATTAATTATAAAATTCTAGAAAGTAA
TTATTATAGATTCCCATTTACTGTACATATAATATTTTGGATTTTATCCATAGTATCTCTAGGAGGTACAAGATTTATAT
ATAGAGTTATAGAAGATAAGGAATGTAATAAGAACAAATGTAACTGTGATTCTAAAGAAAAGAAGTTACTCATAATAGGG
GCAGGAGATGCAGCAGCCCTTATTATAAAAGAAATAAAAAGAAATAGGGAATTAAATTATAGTATAATAGGTCTTATAGA
TGATGACATAGAGAAGTTAGGAAAGAGAATAAATGGTATACCTGTTTTAGGCGGAAGAGAAAGTATTATAAAGATATCTA
AAAATAAAAAAATAGATGAAATAATATTAGCTATACCTTCAGCATCATCTTCAACAAAAAGTGAAATAGTATCTATATGT
AAAGAAACTAGTTGTAAATTAAAAACTTTACCAAGCATGGATAAGGTAATACAGGGTAAATTTAATATGAGTAAGTTAAG
AGATGTAAGTATTGAAGATTTGCTTGGGAGAGAGGAAGTTAAGCTAGATGATAGTGGAATAAATAAATATATAAAGGATA
AAGTAGTTTTAGTTACTGGTGGAGGGGGATCTATTGGGTCAGAACTTTGCAGACAAATAGTTAAATTTTCACCTAAGAAA
CTTTTAATATTAGATATATATGAAAACAATGCCTATGATGTTCAAATGGAATTAAATTATAAATATCCAGAGCTAGATAA
AGCTGTTATAATAGCTTCCATAAGGGATGAAAAGAGATTAAAAGATATATTTTCATCATATAAGCCAGATGTAGTTTTTC
ATGCAGCAGCACATAAACATGTTCCACTAATGGAAGAGAATCCAGCAGAATCTATTAAAAATAATGTAATAGGAACCTAT
AATCTAATAAAATGTGCCCACGAATTTGGAACTGAGCGTTTTGTACAAATAAGTACAGACAAAGCTGTTAATCCAACTAA
TATAATGGGAGCTACAAAAAGATTTTGTGAAATAATGATTCAAGCTTTTGATAAAATAAGTAAGACTGAGTTTGTAGCAG
TTAGATTTGGGAATGTTTTAGGAAGTAATGGATCTGTTATTCCATTATTTAAAAAACAAATAGCTCATGGAGGTCCTGTT
ACTGTAACCCATCCAGAAATAAATAGATATTTTATGACCATACCAGAAGCAGCTCAATTAGTTATACAAGCAGGAGCTAT
GGCAAAAGGTGGAGAAATATTTGTTTTGGATATGGGAAGGCCAGTTAAAATTGTAGATTTAGCTAAAGACTTAATAACCT
TATCTGGTTATAAGCCAGGGGAGGATATTAAAATTGAGTATACAGGATTAAGACCTGGAGAAAAATTATATGAAGAATTA
TTGATGGATGAAATAGCTTTAACATCAACAGGACATAATAAAATATTTGTAGAAAAACCTATGGAAAATAATATAGACTT
TGTAGAAAAATCCATAGAAGAATTTAAGAAAGTTGTTTATAATGATAAAGAAGAAATTTTTGCATTAATACAAAAGAAAG
TTCCAACATATATAAGAAAAAAATAA

Protein sequence :
MRKDRELILYDILLIILSLYLAILLRFDFGMASMASEFKKYMIFFKLSVIPVIIIILFFNKIFNLYSSIWKYASVEELMS
IIYSVSISNIIFIIYSYFINYKILESNYYRFPFTVHIIFWILSIVSLGGTRFIYRVIEDKECNKNKCNCDSKEKKLLIIG
AGDAAALIIKEIKRNRELNYSIIGLIDDDIEKLGKRINGIPVLGGRESIIKISKNKKIDEIILAIPSASSSTKSEIVSIC
KETSCKLKTLPSMDKVIQGKFNMSKLRDVSIEDLLGREEVKLDDSGINKYIKDKVVLVTGGGGSIGSELCRQIVKFSPKK
LLILDIYENNAYDVQMELNYKYPELDKAVIIASIRDEKRLKDIFSSYKPDVVFHAAAHKHVPLMEENPAESIKNNVIGTY
NLIKCAHEFGTERFVQISTDKAVNPTNIMGATKRFCEIMIQAFDKISKTEFVAVRFGNVLGSNGSVIPLFKKQIAHGGPV
TVTHPEINRYFMTIPEAAQLVIQAGAMAKGGEIFVLDMGRPVKIVDLAKDLITLSGYKPGEDIKIEYTGLRPGEKLYEEL
LMDEIALTSTGHNKIFVEKPMENNIDFVEKSIEEFKKVVYNDKEEIFALIQKKVPTYIRKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 6e-90 46
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 4e-90 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLD_1431 YP_001782744.1 exopolysaccharide biosynthesis protein VFG1300 Protein 1e-86 43