Gene Information

Name : CLD_1878 (CLD_1878)
Accession : YP_001782302.1
Strain : Clostridium botulinum Okra
Genome accession: NC_010516
Putative virulence/resistance : Virulence
Product : capsular exopolysaccharide family protein
Function : -
COG functional category : D : Cell cycle control, cell division, chromosome partitioning
COG ID : COG0489
EC number : -
Position : 2866884 - 2867594 bp
Length : 711 bp
Strand : -
Note : identified by match to protein family HMM TIGR01007

DNA sequence : 
TTGGATAGAAACTTAAGTTTGATAACTATAAAAGAACCAAAGTCCCCAATATCTGAAGCCTATAGGACATTAAGAACTAA
TATACAATTTTCATCCTTTGATGAAAAAATAAGTGTAATTTTTGTGACTAGTTCTACTCCAGGAGAGGGTAAATCTACAA
CTTCAGCGAATTTAGCCATAACTATGGCACAAAATGGTTCAGAAACTATTTTGGTAGATTGTGATCTTAGAAAACCTAAT
GTACATAAGTTATTTAAGCTATCTAATACAAGGGGATTATCTAATTTGCTTATAGAAGACAATGGTATAGATAAGGTAAT
ACAACAAAGCGGTATAGAAAATCTACATATTTTAACTTCAGGAATAAAGCCACCTAATCCCTCAGAGTTATTATCTTCTA
AAAAAATGAAAAAATTTATAGAGATGAGTAAAGAACATTATGATTATATAATATTAGATACCCCACCTGTAGGAGTGGTT
ACAGATGCTCAATTGGTATCCCAGTATTCAGATGGAGGGATATTAGTTACAGCTTCTGGACAGGTTGAAAGAGAATTAGC
TATAAGAGCAAAACAACTTTTACAAAAAGTCAATGCAAAAATACTAGGAGTAGTATTAAATAAGGTAGATACAAGCTCTG
GGAATGGATACAGATATTACAATTATTATTATGAAGAAGATGGAAAAAAGAAAAAAAGAAGCAAAAAATAA

Protein sequence : 
MDRNLSLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAITMAQNGSETILVDCDLRKPN
VHKLFKLSNTRGLSNLLIEDNGIDKVIQQSGIENLHILTSGIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVV
TDAQLVSQYSDGGILVTASGQVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 5e-38 44
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 5e-35 43
cpsFD YP_006310771.1 putative autophosphorylating protein tyrosine kinase Not tested FWisland_4 Protein 4e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLD_1878 YP_001782302.1 capsular exopolysaccharide family protein VFG1298 Protein 1e-35 44
CLD_1878 YP_001782302.1 capsular exopolysaccharide family protein VFG1368 Protein 2e-28 44
CLD_1878 YP_001782302.1 capsular exopolysaccharide family protein VFG1349 Protein 2e-31 41