Gene Information

Name : fliP (CLD_1915)
Accession : YP_001782265.1
Strain : Clostridium botulinum Okra
Genome accession: NC_010516
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2832431 - 2833207 bp
Length : 777 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAAGAAAAGAAATAACAGAATGATGTTTATTGTTTTACTAGCTTTAGGTATAGTGTTTTTTTATTCCATGAAAGCCTA
TGCGGCACCACAAAATACCATGCCTATACCTAAAATAAATATTTCTGTAGATAATGCTAATAATCCGACGGAATATGTAG
ATAATATAAAGCTTTTAATAATGTTAACTGTATTAACATTACTGCCATCTTTTATAGTAATGATGACAAGCTTTGTAAGA
ACAATTGTGGTATTTGGATTTTTAAGAAATGCTATGGGAACACAACAATCTCCACCTAATCAGGTAATGATTGGTCTTGC
ACTTTTTTTAACTTTATTTATAATGCAACCGGTATATAGCGAAATAAATACTAAGGCTATACAACCCTATATGAAGAATA
AAATTAATCAAGAACAGGCAGTAGAAATAGGGGCCAAGCCTCTTAGACAATTTATGCTAAAGCAAACAAGGCAAAAGGAT
TTAAAATTGTTTGTGGATCTCGCAAAGCCTAACTTTAAAGTAACAAAGGATAATGCACCTTTATATATAGTGGTACCTGC
CTTTATAATAAGTGAGCTTAAAACAGCTTTTCAAATAGGATTTTTATTATTTATTCCATTTTTAATTATAGATTTAGTAG
TAGCTAGTGTACTTATGTCTATGGGTATGTTTATGTTACCACCGGTCATGATATCCCTACCCTTTAAGCTTTTGTTGTTT
GTGATGGTAGACGGATGGTACCTTCTGGTGAAATCTTTAGTAATGAGTTTTGGTTAG

Protein sequence : 
MKKRNNRMMFIVLLALGIVFFYSMKAYAAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVR
TIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKINQEQAVEIGAKPLRQFMLKQTRQKD
LKLFVDLAKPNFKVTKDNAPLYIVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLF
VMVDGWYLLVKSLVMSFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-22 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-23 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-25 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-23 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-23 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-23 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-23 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-23 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-22 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 6e-18 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 6e-18 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 6e-18 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 8e-24 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-22 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-22 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 5e-22 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-21 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-21 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-22 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_001782265.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-40 60
fliP YP_001782265.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-41 53
fliP YP_001782265.1 flagellar biosynthesis protein FliP VFG2016 Protein 4e-41 52
fliP YP_001782265.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-47 52
fliP YP_001782265.1 flagellar biosynthesis protein FliP VFG0394 Protein 9e-26 44
fliP YP_001782265.1 flagellar biosynthesis protein FliP VFG0044 Protein 2e-23 42
fliP YP_001782265.1 flagellar biosynthesis protein FliP VFG0188 Protein 8e-27 42
fliP YP_001782265.1 flagellar biosynthesis protein FliP VFG0519 Protein 3e-22 41