Gene Information

Name : CLD_2700 (CLD_2700)
Accession : YP_001781488.1
Strain : Clostridium botulinum Okra
Genome accession: NC_010516
Putative virulence/resistance : Resistance
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2058217 - 2058747 bp
Length : 531 bp
Strand : -
Note : identified by match to protein family HMM PF00486

DNA sequence : 
ATGATGCCTAATATTGATGGTTTTCAGGTTTGCCAAAAGATAAGGGACAAAGTATCCTGTCCTATAATATTTTTAAGTGC
TAGACAAAGTGAGATCGATAAAATTAAAGGTCTTTCAGTAGGTGGGGATGATTATATAGTAAAGCCCTTTAGCATAAAAG
AATTAAAAGCAAGAGTTCAGGCTCATCTTAGAAGGGAAAAAAGAGTTCCTTTAAATAATAGATCTAAGATAAGCTTTGAG
AAACTTACTTTAGATATTAATAGTCGTAAAGTTCATTATGAGGATGAGGAAATACTTTTTACAGCTAAAGAATTTGATAT
AGTAGAACTTTTAGCATTACATCCAGAGCAGGTGTTTTCTAAAGAACAAATCTATGAAAAAGTTTGGGGATATGATGCAG
AAGGGGATGCAAATACAGTAGCGGAGCATATAAAAAAGATAAGAGCAAAGTTCATAAAAAGGAATGCATCTCTTAATCAT
ATAGCTACGGTATGGGGAGTAGGTTATAGATGGGAGAAAAATAAAATATGA

Protein sequence : 
MMPNIDGFQVCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKRVPLNNRSKISFE
KLTLDINSRKVHYEDEEILFTAKEFDIVELLALHPEQVFSKEQIYEKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNH
IATVWGVGYRWEKNKI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
nisR2 YP_006309922.1 NisR Not tested FWisland_1 Protein 2e-28 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-28 42
SSU05_0907 YP_001198273.1 NisR Not tested 89K Protein 6e-25 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 6e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLD_2700 YP_001781488.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 1e-31 44
CLD_2700 YP_001781488.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 4e-31 44
CLD_2700 YP_001781488.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 8e-27 43
CLD_2700 YP_001781488.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 8e-27 43
CLD_2700 YP_001781488.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 8e-27 43
CLD_2700 YP_001781488.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 8e-27 43
CLD_2700 YP_001781488.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 8e-27 43
CLD_2700 YP_001781488.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 8e-27 43
CLD_2700 YP_001781488.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 8e-27 43
CLD_2700 YP_001781488.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 8e-27 43
CLD_2700 YP_001781488.1 DNA-binding response regulator AF130997.1.orf0.gene Protein 8e-22 42
CLD_2700 YP_001781488.1 DNA-binding response regulator AF162694.1.orf4.gene Protein 2e-22 42
CLD_2700 YP_001781488.1 DNA-binding response regulator AM180355.1.gene1830. Protein 8e-26 41
CLD_2700 YP_001781488.1 DNA-binding response regulator EU250284.1.orf4.gene Protein 6e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLD_2700 YP_001781488.1 DNA-binding response regulator VFG1563 Protein 6e-29 42
CLD_2700 YP_001781488.1 DNA-binding response regulator VFG1702 Protein 2e-28 41