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Name : CLD_2718 (CLD_2718) Accession : YP_001781470.1 Strain : Clostridium botulinum Okra Genome accession: NC_010516 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2036271 - 2037800 bp Length : 1530 bp Strand : - Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : ATGAGCTTTTCTATGAATTATTTAGATTTAAAGGAGACTGTACAAAACTATGAAGAATTAAGAGGGGGAAAGCAGTGTGA AAATATAGACTTTAGTACTTTAAAAATAGAATCTTCTCTGCTAAAATTGCTGCCAGAGCATATTTGTAGAAAATATAATA TATTACCCCTAAAAATAATTGGCGAACAATTGTATATAGCATCTTCAAATTACTTAAAAGAAGATGCTTTATATAAAATA TCCTTTATTACGGGTAAAAATATAAAAATAGTTCTTTGTAATAAAGAAGATATTTTAGGGGCTATAAAGAGATTTTATAC AAACTATGAAGGAAAATATAATGTTAAAGGAATAAAGGAAGAAAAAGCTATATCCTATGAAGAAAATAAAGAAAAAAATT TAGAAGGCCCTATAATAAAGTTAACAGATTCTATAATAGAAGAGGCTGTTTGGAGAAAGGCTAGTGATATACATATAGAA CCCTTCAAAGATTTTGCTTTAATAAGATTTAGAATAGATGGCATTTTAATAGAATTCAAAAAAATATCAAAAAAAATTTA CACTTCTATTTGCACTCGTATAAAAATAATAAGTTATATGAACATAGCAGAAAAAAACATTCCTCAGGATGGTAAAATAC AAAACAATTATAGAGAAAATAATGATTTTAGAGTATCTACATTGCCCACAGTATATGGCGAAAAACTAGTGATAAGAATA CTATATAAAAATGAAAAAATAGCAGATTTAAAATCTTTAGGATTTTTAAAAGGAGATAGAAAAAATATAGAAAAAATGCT TAAAAAACCTAATGGATTAATTTTAATTACAGGGCCTACAGGCAGTGGTAAATCTACAACTTTATATTCTATGCTTCAAT ATATAAACAATAAAGAAAAAAACATAATAACCATTGAAGAGCCAGTAGAATATACTATAGATGGTATAAACCAAGTTAAT GTAGATTATAAAAGGGAACTTACTTTTCTAAAAGGTTTAAAATCAATACTTAGACAGGACCCGGATATAATAATGGTAGG AGAAATTAGAGATGAAGAAACAGCTAAAGTAGCGGTAAGAGCCTCTATAACAGGACATTTAGTTTTATCTACTCTACATA CTAATGGAGCCTTAGAATCTATAATAAGGCTTTTGGATATGAAAATAGAACCCTATATTCTAAGTGATGCCTTAAGAGGA ATTATTTCACAAAGATTGGTGAGAAAGATATGTCCTTATTGCAAAGAAGCATATATACCTTCAACGGAGGAAAAGAACTT TGTAAATTTAAAAGAAGAGTTTTTACTATATAAGGGTGAAGGATGCAATAAATGCAATAATACAGGTTATATAGGTAGAA GCGTTCTTTATGAATATATAAATATTGATAAAGAAAAAAAGGACTTAATTAAAAACATAGTAAAAAACAATAATGAAGAA ATTTTTTTAGAAAATAGCTTAAAAGAAAATGTTAATAAAGCATTAATACAAGGAAGGACATCCTTTAGTGAAATCCAAAG AATAATATAA Protein sequence : MSFSMNYLDLKETVQNYEELRGGKQCENIDFSTLKIESSLLKLLPEHICRKYNILPLKIIGEQLYIASSNYLKEDALYKI SFITGKNIKIVLCNKEDILGAIKRFYTNYEGKYNVKGIKEEKAISYEENKEKNLEGPIIKLTDSIIEEAVWRKASDIHIE PFKDFALIRFRIDGILIEFKKISKKIYTSICTRIKIISYMNIAEKNIPQDGKIQNNYRENNDFRVSTLPTVYGEKLVIRI LYKNEKIADLKSLGFLKGDRKNIEKMLKKPNGLILITGPTGSGKSTTLYSMLQYINNKEKNIITIEEPVEYTIDGINQVN VDYKRELTFLKGLKSILRQDPDIIMVGEIRDEETAKVAVRASITGHLVLSTLHTNGALESIIRLLDMKIEPYILSDALRG IISQRLVRKICPYCKEAYIPSTEEKNFVNLKEEFLLYKGEGCNKCNNTGYIGRSVLYEYINIDKEKKDLIKNIVKNNNEE IFLENSLKENVNKALIQGRTSFSEIQRII |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-74 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-74 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CLD_2718 | YP_001781470.1 | general secretion pathway protein E | VFG1876 | Protein | 2e-74 | 46 |
| CLD_2718 | YP_001781470.1 | general secretion pathway protein E | VFG2048 | Protein | 1e-74 | 44 |
| CLD_2718 | YP_001781470.1 | general secretion pathway protein E | VFG0182 | Protein | 4e-76 | 41 |
