Gene Information

Name : CLD_3344 (CLD_3344)
Accession : YP_001780848.1
Strain : Clostridium botulinum Okra
Genome accession: NC_010516
Putative virulence/resistance : Resistance
Product : oligopeptide ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1359085 - 1359759 bp
Length : 675 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
TTGAGTATAATTAAAGCTACTGATGTAAAAAAAACTTTTACTATAGGCAAGATGAAAGTAGACATACTTAAAGGGGTTTC
TGTAGAAATTGAAAAAGGTGAATTTGTTGCTATCATTGGTGAGTCTGGTTCTGGTAAATCTACCTTTCTAAATATATTAG
GTGGTTTAATGCCTCCTTCCTCTGGCGATATTTTTATAGAAAATGAAAAAATCAATGGTCTTTCTGAAAATAATTTAGCT
TTATTTAGAAGACATAATATAGGCTTTGTTTTTCAGTCCTATAATTTAATCCCTCAACTTACAGCTTTAGAAAATGTGGA
AATGCCTCTTATTTTTTCAGGGATTTCTAAAAAAGAACGAAAAAATAGAGCCTTTGAAATGCTTAAAAAAGTTGGACTTG
AAGAAAGAGCTCATCATAAGCCTTCTGAACTATCCGGTGGACAACAGCAAAGGGTTTCCATTGCTAGAGCTCTAGTAAAC
TATCCTAAAATAGTGCTTGCTGATGAACCTACTGGAAATTTAGATAGCAAAAATGGTACAGAAATTCTAAATATATTAAA
AGAATTAAACGAAACCACTGGACAAACCTTTGTAATTGTTACTCACTCTTCTCAGGTTTGTGATTATGCAAATAAAATAA
TAAAAGTGGTAGATGGAAAAGTATTGAATAACTAA

Protein sequence : 
MSIIKATDVKKTFTIGKMKVDILKGVSVEIEKGEFVAIIGESGSGKSTFLNILGGLMPPSSGDIFIENEKINGLSENNLA
LFRRHNIGFVFQSYNLIPQLTALENVEMPLIFSGISKKERKNRAFEMLKKVGLEERAHHKPSELSGGQQQRVSIARALVN
YPKIVLADEPTGNLDSKNGTEILNILKELNETTGQTFVIVTHSSQVCDYANKIIKVVDGKVLNN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-38 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-38 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 44
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 4e-27 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLD_3344 YP_001780848.1 oligopeptide ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 7e-51 51
CLD_3344 YP_001780848.1 oligopeptide ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-46 48
CLD_3344 YP_001780848.1 oligopeptide ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-42 47
CLD_3344 YP_001780848.1 oligopeptide ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-48 46
CLD_3344 YP_001780848.1 oligopeptide ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 1e-37 43