Gene Information

Name : Xfasm12_2115 (Xfasm12_2115)
Accession : YP_001776604.1
Strain : Xylella fastidiosa M12
Genome accession: NC_010513
Putative virulence/resistance : Virulence
Product : response regulator receiver protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2215997 - 2217478 bp
Length : 1482 bp
Strand : -
Note : KEGG: xfa:XF2545 two-component system, regulatory protein

DNA sequence : 
ATGCGTTGCCGTGCGGCTGAAGACGATGGGAATTGTCCATCTTCAGTCTGCTGCGTTATCTTGGCATTCATGAATGAATC
CCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTATGGGGCTGCGTA
TCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCACCGACATGCGT
TTACCTGACGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCCATGATCACTGC
TTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGTTGATCTGAACG
TCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGCCACAAAGCCCC
AGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGTAGTCAAGCCCC
GGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGTGCGTGCTGCTG
GGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACAAGAAAGGGAGT
TTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGATGAAGTTGCCGA
ATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGCAACCGTTGAGG
TACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGTTTCCGTCACGAC
TTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGTTGGCGATTTGCCGCATCTTGCTGC
AGCCATTGTGGCTCGCTTGGCTCACACGCATGGGCGGGCGGTTCCGTTGCTTTCACCCTCCGCCTTGGAGGCGTTAGATC
ATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAGATGATCATATC
GGTGTCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCCACAGTTCTTCC
GATTGTGCCTGTGGACGCATCGGCATTGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTACATGGAGCAGCTGG
AACGTGCTGCCATTCAAAAGGCGTTGGAAGAAAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTGGCATCACTTTC
CGTGCATTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Protein sequence : 
MRCRAAEDDGNCPSSVCCVILAFMNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMR
LPDGSGIELVKKIVRHYPRTPVAMITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSP
SQRLLGESSPMAQLRATIAKVARSQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGS
FTGAHTDKPGLFQSAGGGTLFLDEVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHD
LYYRINVIEIRVPPLRERVGDLPHLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHI
GVADLHLPQGSLHGQGLPLPLVPTVLPIVPVDASALVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITF
RALRYKLKKLGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-100 47
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-100 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Xfasm12_2115 YP_001776604.1 response regulator receiver protein BAC0089 Protein 2e-75 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Xfasm12_2115 YP_001776604.1 response regulator receiver protein VFG1214 Protein 8e-126 59
Xfasm12_2115 YP_001776604.1 response regulator receiver protein VFG0116 Protein 5e-59 41