Gene Information

Name : M446_2028 (M446_2028)
Accession : YP_001768926.1
Strain : Methylobacterium sp. 4-46
Genome accession: NC_010511
Putative virulence/resistance : Virulence
Product : type II secretion system protein E
Function : -
COG functional category : N : Cell motility
COG ID : COG2804
EC number : -
Position : 2263123 - 2264748 bp
Length : 1626 bp
Strand : -
Note : PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: xau:Xaut_2107 type II secretion system protein E

DNA sequence :
GTGGGGGCGTTCGAGCGGTCCGTCACGGGAGAGGCCCTGCCGCCGGAGGCGGGGGGCGCGGAGGCGCTCTGGCGCGCGGG
CGGCGTCCCGGCGGGGGACCTCGCCCAGGCGCTCGCCGCGCATCACGGCCTGCCCCGCCTCGACCGCGACGCGGTCGCGG
CCCTGCCGGACCTGACCGCCGGGCTGTCCCGCCGCTTCCTCGCCGACGCCTTCCTGTACCCGGTCGCCGGGCCGGAGGGG
CCGCTCCTCCTGGTGGCCGATCCCGGAAACGAGGAGGCGATCCGCGCCGTGGCGCTCGCCCTCGGCTGCGCGCCCCGGCT
CGGGGTCCTCTCCTTCGAGGAGATCGGCGAACTCATCGCCCGGGCCGAGGGCGCCACCGCCGCGCCCGAGGCGCGGGCGC
GCCCCGCCCACGCGGATCTCGGCCTCACGGACGACGTCGAGGCGCTGCAGGACCTCGCCCGGGGCGCCCCGATCGTGCGG
GCCATCGACGCGCTCCTGGAGCGCGCCGTCGAGGTCGGGGCGACCGACATCCACCTGGAGACCGGCCGCGAGGAGTTGCG
GGTGCGGCTGCGGATCGACGGGCGGCTGCGCCTGCACCAGACCCTGCCGAAGGACATGGCCCCGGCGATCATCTCGCGGG
TGAAGATCCTGGCCGGGCTCGACATCGCCGAGCGGCGCCTGCCGCAGGACGGGCGCACCAATGTGCGGGTGCGCGCGAGC
GAGGCGGATCTGCGCGTCGCCGTGATGCCGACCCTCTACGGCGAGACGGCGGTGCTGCGCATCCTGGTGAAGGACGCGCG
CCTCCTCGACTTCGCCCGGGTCGGCCTCTCGGCCCGCGACCGGGACGCGCTGGAGCGGATGCTCGGCGAGCCGCACGGGC
TGATCATCGTCACCGGGCCGACCGGCAGCGGCAAGACCACCACGCTCGCCACCGCGGTCTCGCTCCTCAACGACCCGGCC
CGCAAGATCGTCACGGTCGAGGACCCGATCGAGTACCAGATCCCCGGCATCCACCAGACCCAGATCAAGCCCGGCATCGG
GCTCACCTTCGCGAACGCGCTGCGCTCCTTCCTGCGCCACGATCCGGACGTGATCATGGTCGGCGAGATGCGCGACCGCG
AGACGGCGGCGATCGGCATCCAGGCGGCGCTCACCGGCCACCTCGTGCTGACCACCCTCCATACCAACAGCGCCCCGGAC
GCGGTCATCCGCCTCGCCGACATGGGCGTCGAACCCTACCTGATCGCCGCGTCCCTGCGGGGGGTCGTCGGGCAGCGCCT
GGTGCGGCGCCTGTGCGAGCGCTGCCGGGCGCCGGATCCGGACGGGGGCGCGGCGCTCGACGCGGTCTGCGCCCGCCGGG
GCTTCGCGCGGCCGGGGGGCGGGCGGGTCCATCGCCCGGTCGGCTGCCCGCATTGCGGCGGCAGCGGCTTTCGCGGCCGG
GTCGGGGTCTTCGAGGTGATGCCGGTGGACGAGGCGCTCACCGGCCTGATCCGGCGCGAGCCCGACCCGCTGGTGCTGCT
GCGCGCCGCCCGCGAGGCCGGGATGACGACGATGCTGGAGGACGGCCTCGCCAAGGCCGCCGACGGGCTCACCTCGCTCG
ACGAGGTGATGCGGATGACCGGCTAG

Protein sequence :
MGAFERSVTGEALPPEAGGAEALWRAGGVPAGDLAQALAAHHGLPRLDRDAVAALPDLTAGLSRRFLADAFLYPVAGPEG
PLLLVADPGNEEAIRAVALALGCAPRLGVLSFEEIGELIARAEGATAAPEARARPAHADLGLTDDVEALQDLARGAPIVR
AIDALLERAVEVGATDIHLETGREELRVRLRIDGRLRLHQTLPKDMAPAIISRVKILAGLDIAERRLPQDGRTNVRVRAS
EADLRVAVMPTLYGETAVLRILVKDARLLDFARVGLSARDRDALERMLGEPHGLIIVTGPTGSGKTTTLATAVSLLNDPA
RKIVTVEDPIEYQIPGIHQTQIKPGIGLTFANALRSFLRHDPDVIMVGEMRDRETAAIGIQAALTGHLVLTTLHTNSAPD
AVIRLADMGVEPYLIAASLRGVVGQRLVRRLCERCRAPDPDGGAALDAVCARRGFARPGGGRVHRPVGCPHCGGSGFRGR
VGVFEVMPVDEALTGLIRREPDPLVLLRAAREAGMTTMLEDGLAKAADGLTSLDEVMRMTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 2e-59 47
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-59 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M446_2028 YP_001768926.1 type II secretion system protein E VFG2426 Protein 6e-50 48
M446_2028 YP_001768926.1 type II secretion system protein E VFG0182 Protein 4e-62 48
M446_2028 YP_001768926.1 type II secretion system protein E VFG2048 Protein 2e-59 47
M446_2028 YP_001768926.1 type II secretion system protein E VFG1876 Protein 2e-56 45