Gene Information

Name : Mrad2831_6260 (Mrad2831_6260)
Accession : YP_001766986.1
Strain :
Genome accession: NC_010510
Putative virulence/resistance : Unknown
Product : integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 549317 - 550192 bp
Length : 876 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: bov:BOV_A1015 IS3 family element, transposase orfB

DNA sequence :
ATGAGGTTCCGCCTCATCGACGCGGCGAAGAAGGACTTCCCGGTCGCGCGCCTGTGCAAGGTCCTCGACGTCAGTCCGAG
CGGCTATTTCGCCTGGAAGAACCGCCCGGCCTCGACGCGGCAGCGCGAGGATCTCGTGCTGCTTGCCCACGTCCGATCCG
CCTTCACGCTCTCGCACGAGACGTATGGCAGCCCGCGCATGACCCACGAGTTGCGCGAGCAGGGCCTGGCGGCAGGCCGG
CGGCGCGTGGCCCGGCTGATGCGGGAGAACGGGCTCAAAGCCCGCCAGCCGCGCCGCTTCCGGCGCACGACGGACAGCGG
CCACGCCTTTCCGGTCGCGCCCAACCACCTCGACCAGGACTTCACGGCGGCCGGGCCGGACCGCAAGTGGGGAAGCGACA
TCTCCTACATCTGGACGCGGGAGGGCTGGTTGTACCTGGCGGTGGTCCTCGATCTGTACTCCCGACGGGTCGTGGGCCGG
GCGGCGGGCGACCGGCTTCACAAGGAGCTCGCGCTGACCGCGCTGCGACGTGCCCTTGTCGTCCGACGGCCCGGACCAGG
TTTATTTCATCATTCCGACCGCGGCAGTCAGTACTGTTCGAATGAGTATCAGGCGGAACTACGAGGACATGGCATCGTGA
TCTCGATGTCCGGCAAGGGAAATTGTTATGACAACGCGATGGTCGAGACGTTCTTCAAGACGCTGAAGAGCGAGTTGGTC
TGGCGCACCGCGTTCCAGACGCGAGCCGAGGCCACCATCGCGCTGGCCCGTTACATCGATGGCTTTTACAATCCCTGCCG
CCGTCACTCGGCGCTGGGCTTCACAAGCCCCACCCAGTTCGAGAGGGGTATCAACCACCAAGCTGCTCTCCACTGA

Protein sequence :
MRFRLIDAAKKDFPVARLCKVLDVSPSGYFAWKNRPASTRQREDLVLLAHVRSAFTLSHETYGSPRMTHELREQGLAAGR
RRVARLMRENGLKARQPRRFRRTTDSGHAFPVAPNHLDQDFTAAGPDRKWGSDISYIWTREGWLYLAVVLDLYSRRVVGR
AAGDRLHKELALTALRRALVVRRPGPGLFHHSDRGSQYCSNEYQAELRGHGIVISMSGKGNCYDNAMVETFFKTLKSELV
WRTAFQTRAEATIALARYIDGFYNPCRRHSALGFTSPTQFERGINHQAALH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 4e-68 57
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-68 57
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-68 57
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 9e-46 47
unnamed AAF09030.1 unknown Not tested SHI-O Protein 8e-46 47
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 7e-46 47
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 8e-46 47
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 7e-46 47
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 8e-46 47
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 7e-46 47
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-46 47
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 9e-46 46
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 9e-45 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 9e-45 43
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 2e-44 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-43 42
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-30 41
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 7e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mrad2831_6260 YP_001766986.1 integrase catalytic region VFG1706 Protein 4e-46 47
Mrad2831_6260 YP_001766986.1 integrase catalytic region VFG1631 Protein 1e-43 42