Gene Information

Name : Bcenmc03_1792 (Bcenmc03_1792)
Accession : YP_001765078.1
Strain :
Genome accession: NC_010508
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1991968 - 1992813 bp
Length : 846 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: rso:RSc2331 ISRSO10-transposase orfB protein

DNA sequence :
GTGAAGCAGGTCTGCGACGTTCTCGGTGTAGCGCGCTCGAACATGGCGGCAAGGCTTGCAAGACCGGCAGATTGGCTGGA
TGGACGTAGTGCCAGGAAGACGGACGATGCCGGACTGGTGGAAGAGATTCGGCAGACCGTCGCTGAGCTGCCGAGCTACG
GCTACCGCCGCGTTTGGGGCATGTTGCGCCGCGAGCGGGAGCGCCGGGGTATCGCTCCCGTGAATGCCAAACGCGTGTAT
CGGGTGATGCGCGTTCACGGCTTGCTGCTACAACGCCGGCCCTCTCCACCACGGCCGCAGCGTCGGCACGATGGCAAGGT
CGCAGTGGCTAAGAGCAACCAGCGCTGGTGTTCTGACGGCTTCGAGTTTCGTTGCGACAACGGCGAACCGCTGCGCGTCA
CGTTCGCTCTAGATTGCTGTGACCGGGAAGCGTTGAGCTGGGCGGCAACGACTGGCGGCCACAGCGGCGACGTGGTGCGT
GATGTCATGCTGGCAGCCGTTGAGAACCGCTTTGGCAACGTCCTGAAGGCTCCGACGGAAATCGAATGGCTGACGGACAA
CGGCTCGGGCTATACGGCGGAAAAGACCAGGGTCTTCGCGTCTGGCATTGGCCTGAAGCCATTGACCACACCTGTCTGCA
GCCCGCAAAGTAACGGCATGGCAGAAAGCTTCGTGAAGACGATGAAGCGTGACTACGTGGGGTTCATGCCCAAGCCAGAC
GCCGCGAGCGCAGCGCGCAATCTCGCTATCGCGTTCGAGCATTACAACGAGAAGCATCCGCATAGCGCGTTGAAGTATCG
CTCTCCACGTGAGTTCAGGCGAACCTTGGCCAGGGAGGGAGTCTGA

Protein sequence :
MKQVCDVLGVARSNMAARLARPADWLDGRSARKTDDAGLVEEIRQTVAELPSYGYRRVWGMLRRERERRGIAPVNAKRVY
RVMRVHGLLLQRRPSPPRPQRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREALSWAATTGGHSGDVVR
DVMLAAVENRFGNVLKAPTEIEWLTDNGSGYTAEKTRVFASGIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVGFMPKPD
AASAARNLAIAFEHYNEKHPHSALKYRSPREFRRTLAREGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 5e-73 64
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 8e-71 64
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 4e-71 64
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 4e-69 64
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 1e-73 62
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 7e-75 62
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 7e-75 62
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 4e-75 62
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 3e-75 62
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 1e-74 62
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 7e-75 62
aec49 AAW51732.1 Aec49 Not tested AGI-3 Protein 4e-74 61
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 1e-68 57
c5197 NP_757045.1 transposase insD Not tested PAI II CFT073 Protein 1e-44 50
insD YP_854263.1 IS2 transposase Not tested PAI I APEC-O1 Protein 1e-46 50
insD AAZ04432.1 IS2 transposase Not tested PAI I APEC-O1 Protein 1e-46 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcenmc03_1792 YP_001765078.1 integrase catalytic subunit VFG0649 Protein 2e-69 64
Bcenmc03_1792 YP_001765078.1 integrase catalytic subunit VFG1732 Protein 1e-75 62
Bcenmc03_1792 YP_001765078.1 integrase catalytic subunit VFG0621 Protein 3e-75 62
Bcenmc03_1792 YP_001765078.1 integrase catalytic subunit VFG0608 Protein 3e-75 62