Gene Information

Name : Swoo_4783 (Swoo_4783)
Accession : YP_001763127.1
Strain : Shewanella woodyi ATCC 51908
Genome accession: NC_010506
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5771688 - 5772365 bp
Length : 678 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_4392 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAAGATATTACTCGTAGAAGATGACGCAACCACTATCGAATATGTGGTTAAAGGATTTACCGAACAGGGTCACAATAT
TGAGACGGCTTCAGATGGTCACCAGGGGTTACTGCTTGCTACAAGCATGAAGTATGATCTGATCTTGCTTGACCGTATGC
TGCCACAGCTCGATGGTCTTAAGCTGTTGGCGGCATTGAGAGCCACAGGGAGCCAGACTCCGGTATTGATCTTGTCGGCT
TTAAGCCATGTGGATGAGCGGGTAAAAGGCCTGCGCGCTGGTGGCGATGATTATATGACTAAGCCTTTTGCTTTTTCTGA
GCTATTGGTTAGAGCCGAAAAATTGATGCAGCGTGGTTTATCACAACCAGCCGAAACTGGATTAACCGTAGGTAATCTGG
TGATGGAGCTGTTGACTCGCAAAGTGACCTTAGATGGGAACGAGTTGATGCTGCAGCCAAAAGAGTTTCAGTTATTAAAG
TATTTGATGGAACACCCGAATCAAGTGATTAGCCGTACCTTGCTGTTTGAAGCTGTGTGGGATTACCACTTCGATCCTCG
TACTAATGTGATTGATGTTCATATTGCAAAACTTAGACGTAAATTCGAAGAGCTAGGTTTTGGCGAGTTGATTGAAACAG
TCAGGGGTGCTGGCTATCGTCTCCGTCAAGGGAATTAA

Protein sequence : 
MKILLVEDDATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRMLPQLDGLKLLAALRATGSQTPVLILSA
LSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGLSQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEFQLLK
YLMEHPNQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRLRQGN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-41 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-40 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swoo_4783 YP_001763127.1 two component transcriptional regulator BAC0347 Protein 6e-45 46
Swoo_4783 YP_001763127.1 two component transcriptional regulator BAC0111 Protein 3e-46 45
Swoo_4783 YP_001763127.1 two component transcriptional regulator BAC0083 Protein 3e-41 44
Swoo_4783 YP_001763127.1 two component transcriptional regulator BAC0197 Protein 1e-38 44
Swoo_4783 YP_001763127.1 two component transcriptional regulator BAC0125 Protein 1e-40 43
Swoo_4783 YP_001763127.1 two component transcriptional regulator BAC0308 Protein 5e-41 43
Swoo_4783 YP_001763127.1 two component transcriptional regulator BAC0638 Protein 5e-38 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swoo_4783 YP_001763127.1 two component transcriptional regulator VFG0596 Protein 3e-41 46
Swoo_4783 YP_001763127.1 two component transcriptional regulator VFG1389 Protein 6e-36 43