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Name : Swoo_4734 (Swoo_4734) Accession : YP_001763079.1 Strain : Shewanella woodyi ATCC 51908 Genome accession: NC_010506 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 5711952 - 5714096 bp Length : 2145 bp Strand : - Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: slo:Shew_3619 general secretion pathway protein D DNA sequence : ATGAATAAGAAGAATATTCGCAGGAAGTTAATCGCAAGTTTAGTGATGGGGGCATCTTTACTTGCTCCTCAACTTGCTTG GTCTGAGCAGTATGCGGCTAATTTCAAAGGGACTGATATTCAAGAGTTTATCAACATTGTTGGTAAGAACCTTAATAGGA CTATCATTGTCGATCCTACTGTGCGCGGTAAAATCAATGTCCGCAGTTACGATCTGCTCAACGATGAGCAATATTATCAA TTCTTCCTCAATGTACTTCAGGTTTATGGTTATGCCGTCGTCGAGATGGATAACAACATCATCAAGGTCATCAAAGATAA AGATGCAAAAACAGCCGCTATTCGTGTGGCCGATGATAAAACTCCCGGCTTAGGCGATGAGATGGTGACGCGAATTGTTG CCCTCTACAACACAGAAGCTAAGCAGCTTGCTCCGCTACTTCGTCAGCTTAATGATAATGCCGGTGGCGGTAACGTGGTT AACTATGACCCATCCAATGTCTTGATGATCTCTGGCCGTGCTGCCGTAGTGAATAAGTTGGTTGAGATTGTTCGCCGCGT CGATAAGCAAGGTGATACTGAAGTTCAGGTTGTGCCACTCGAATACGCCTCTGCAGGCGAGATAGTGCGCATTATCGATA CCTTATATCGCTCTACCGGAAATAAATCTCAGATGCCTGGCCAGGCACCAAAAGTGGTGGCTGATGAGCGTATGAATGCC GTCATCGTTAGCGGTGACGAGAAGAGCCGCCTACGTGTGGTTTCGTTAGTGAAAAAACTCGATGCCGAGCAAGCCAGCAC AGGTAATACTAAGGTACGTTATCTCAGATACGCTAAAGCCGAAGATCTGGTTGAGGTGTTAACAGGTTTTGCTGAGAAGC TAGTCAACGACAAAGATGGCGGCGGTGGACAAGCCGGTGGTAAGAAGCGCCGTAATGAGATCAACATTATGGCCCATGAT GACACCAACGCTTTGGTGATCAGTGCTGAGCCAGATCAGATGCGTACCATTGAAAGTGTTATTAACCAGTTAGATATTCG CCGTGCACAGGTTTTGGTTGAAGCGATTATCGTTGAGGTCTCAGAGGGCGATGATGTCGGTTTCGGTGTTCAGTGGGCAA CCGCAGCAGGTGGTGGTACTCAGTTTAATAATTTAGGCCCGACTATCGGCGAGATTGGTGCTGGTGTTTGGAATGCTAGA GATCAAAAAGCCTCTCAAACCTGTAGTGGTTCAGGCGACAATCAAACCTGTACCGATAATCCAGATACTCCCGGTGATAT TACCTTGCTAGCTCAAGCGTTAGGCAAGGTTAATGGTATGGCGTGGGGCGTGGCCATGGGTGACTTCGGTGCACTGATCC AAGCTGTTTCTAGCGATACCAAATCAAATGTTTTAGCGACACCTTCAATCACGACACTAGATAACCAAGAAGCGTCATTT ATTGTTGGTGATGAAGTGCCTATTTTAACGGGCGCGCAAAACTCAAGTAACGGCAACAGTAACCCATTCCAAACCGTTGA GCGTAAAGAGGTGGGAGTTAAGCTCAAGGTTGTGCCGCAAATTAACGAAGGTAGCTCGGTTAAGCTGACCATTGAGCAAG AGGTGTCAGGCATTAACGGTAAAACAGGTGTCGATGTGACCTTTGCTACGCGCCGTTTGACCACTACTGTGATGGCTGAT TCGGGGCAGATCGTTGTGCTAGGTGGCTTGATTAATGAAGAGGTGCAGGAGAGTGTGCAGAAGGTACCTTTCCTTGGTGA TATCCCGATCATTGGTCACCTGTTTAAGTCCTCATCAAGCGGTAAGAAAAAGAAAAATCTGATGGTGTTTATTAAGCCAA CGATTATTCGTGATGGCATCACCATGGAAGGCATCGCAGGTCGTAAATATAACTATTTCAGAGCACTACAGATGGAGCAG CAGGAGCGTGGTATTAACCTAATGCCAAACAGCGAAGTACCTGTTCTTGAAGAGTGGAATCAAGCAGATTACCTACCTCC TGAAGTGAACGATATTCTTGAGCGTTACAAAGAGGGCAAAGGTTTAGAGACTAAGATGCGTCAAACAGACTCTACCCTGA AATCTATCTCAGATAATAAAGAGACTGATACCGATACTGCCAGCGAAGATAGTCATGATGAGTGA Protein sequence : MNKKNIRRKLIASLVMGASLLAPQLAWSEQYAANFKGTDIQEFINIVGKNLNRTIIVDPTVRGKINVRSYDLLNDEQYYQ FFLNVLQVYGYAVVEMDNNIIKVIKDKDAKTAAIRVADDKTPGLGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV NYDPSNVLMISGRAAVVNKLVEIVRRVDKQGDTEVQVVPLEYASAGEIVRIIDTLYRSTGNKSQMPGQAPKVVADERMNA VIVSGDEKSRLRVVSLVKKLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAEKLVNDKDGGGGQAGGKKRRNEINIMAHD DTNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVSEGDDVGFGVQWATAAGGGTQFNNLGPTIGEIGAGVWNAR DQKASQTCSGSGDNQTCTDNPDTPGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTKSNVLATPSITTLDNQEASF IVGDEVPILTGAQNSSNGNSNPFQTVERKEVGVKLKVVPQINEGSSVKLTIEQEVSGINGKTGVDVTFATRRLTTTVMAD SGQIVVLGGLINEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIRDGITMEGIAGRKYNYFRALQMEQ QERGINLMPNSEVPVLEEWNQADYLPPEVNDILERYKEGKGLETKMRQTDSTLKSISDNKETDTDTASEDSHDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-146 | 51 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 5e-154 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Swoo_4734 | YP_001763079.1 | general secretion pathway protein D | VFG2047 | Protein | 1e-145 | 51 |
