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Name : Swoo_4733 (Swoo_4733) Accession : YP_001763078.1 Strain : Shewanella woodyi ATCC 51908 Genome accession: NC_010506 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 5710391 - 5711962 bp Length : 1572 bp Strand : - Note : KEGG: sse:Ssed_4357 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase DNA sequence : ATGATGAGTGAGACACAAGCAACACAAATTGATGAACTCGCTCAAGTCAGTGATGAGCTTGGCTTAACCGCTGAGAGTGA AACCGATGAGGTGTTTCACTCTAACAGTAAGGAGCGCCTGCCATTTGCTTATGCCCACCGCTTCAAGGTGGTGCTCGATA AGCGTGATGATGAGCTAACCCTGTTTCACACCAGCGAGTCTCCTGTTACAGCTTTACTCGAAGCGAGACGCTACACAGGT CGTAACTTGCCTCTTGTTGAACTGGCTGCACCAGAGTTTGAAACTAAACTAACCATGGCTTATCAAGCTAACTCTTCTGA AGCTCAGCAGCTGATGGAAGATATTGGTAACGAGATGGATCTGTTTACTCTGGCCGAAGAGCTACCTCAAACGGAAGATC TGTTAGAGGGTGATGACGATGCACCGATCATTAAGTTGATCAACGCTCTGCTCTCTGAAGCGATCAAAGAGGAAGCATCG GATATCCATATCGAGACCTACGAGAAGCAGTTAGTGGTTCGCTTCCGTGTCGATGGTGTCTTGAAAGAGGTGCTTAAACC TAATCGTAAACTCTCATCGCTACTGGTTTCTCGTATCAAGGTGATGGCGCGTTTGGATATTGCTGAGAAGCGCGTTCCAC AAGATGGCCGTATCTCATTGCGAATTGCTGGCCGAGCAGTGGATGTGCGTGTATCTACTATGCCTTCTAGCCATGGTGAG CGTGTGGTACTGCGTCTACTGGATAAGAATGCTGGTAACCTAGATCTTGTGCAGTTGGGCATGACTCACAATGTGCAGGT TCAGTTTGAAGAGCTTATCCGTAAGCCTCACGGCATTATTTTGGTGACCGGTCCAACAGGTTCAGGTAAGAGTACCACCC TGTATGCGGGCTTAACTGAGCTTAACTCTAAAGATACCAATATTCTGACTGTAGAAGATCCTATCGAGTATGAACTTGAG GGGATAGGCCAGACTCAGGTGAACACTAAGGTTGATATGACCTTCGCCCGTGGATTGAGAGCGATTCTGCGTCAAGATCC TGATGTGGTGATGATAGGTGAGATTCGAGATTTAGAAACGGCGCAAATTGCGGTTCAAGCATCATTAACTGGTCATATGG TGTTATCGACACTGCATACCAACACAGCAGCAGGTTCGATCACTCGACTACAAGATATGGGAGTTGAGCCTTTCCTTGTC TCCTCGAGTCTACTTGGTGTACTAGCCCAACGTCTGATCCGAACCTTGTGTCCAGATTGTAAGTCTGAGCATATACCGGA TCAAAGTGAGCGCGACCTACTCGGTATGTCAGCTGACGATACTCGGGTTATCTATCGCGCCGAAGGGTGTAAGAACTGTG GCCATAACGGTTATCGTGGTCGTACTGGTATCCATGAGCTGTTAGTGGTCGATGATGATGTGCGTGAACTCATCCATACT GGACGAGGCGAGCTTGCCATCGAGAAACACATACGTAAGAGCACGCCGAGTATTCGACACGATGGTATGAGTAAAGTTCT TGCAGGTCGAACGACCTTGGAAGAGGTGTTACGTGTTACTCGTGAGGAGTAG Protein sequence : MMSETQATQIDELAQVSDELGLTAESETDEVFHSNSKERLPFAYAHRFKVVLDKRDDELTLFHTSESPVTALLEARRYTG RNLPLVELAAPEFETKLTMAYQANSSEAQQLMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEAS DIHIETYEKQLVVRFRVDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIAGRAVDVRVSTMPSSHGE RVVLRLLDKNAGNLDLVQLGMTHNVQVQFEELIRKPHGIILVTGPTGSGKSTTLYAGLTELNSKDTNILTVEDPIEYELE GIGQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHMVLSTLHTNTAAGSITRLQDMGVEPFLV SSSLLGVLAQRLIRTLCPDCKSEHIPDQSERDLLGMSADDTRVIYRAEGCKNCGHNGYRGRTGIHELLVVDDDVRELIHT GRGELAIEKHIRKSTPSIRHDGMSKVLAGRTTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-157 | 65 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-157 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Swoo_4733 | YP_001763078.1 | general secretory pathway protein E | VFG0182 | Protein | 2e-153 | 65 |
| Swoo_4733 | YP_001763078.1 | general secretory pathway protein E | VFG2048 | Protein | 1e-157 | 64 |
| Swoo_4733 | YP_001763078.1 | general secretory pathway protein E | VFG1876 | Protein | 1e-138 | 57 |
| Swoo_4733 | YP_001763078.1 | general secretory pathway protein E | VFG2426 | Protein | 9e-79 | 46 |
