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Name : Swoo_4732 (Swoo_4732) Accession : YP_001763077.1 Strain : Shewanella woodyi ATCC 51908 Genome accession: NC_010506 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 5709087 - 5710310 bp Length : 1224 bp Strand : - Note : TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: sse:Ssed_4356 general secretion pathway protein F DNA sequence : ATGCCAGCGTTTGAATATAAGGCATTAGATAATAAGGGAAAGCAGCAGAAAGGTGTGATGGAAGCTGATACGGCGCGTCA TGCCCGTGGTCAGTTAAGAGAACTGCGCCTGATGCCGCTGGAGATTGTGCCAGTTGTAGAGAAGGAGACCAAGGCGAAAA CCGGTGGTAAAAGCCTGTTTCAACGTGGGATCTCTGTCGCTGAACTCGCCCTTATTACCCGTCAGATTGCTACCTTAGTG GCGGCTGGTTTACCTGTTGAAGAGGCGCTAAAAGCCGTTGGTCAGCAGTGTGAGAAAGATAGGCTCGCCAGCATGATCAT GGCGGTTCGCTCCCGTGTCGTTGAGGGTTATAACTTAGCCGACTCTATGGCCGAGTTCCCCCATATCTTTGACGATCTCT ACCGCGCTATGGTGGCTTCCGGTGAAAAATCTGGCCACCTAGAAGTTGTACTTAATCGACTTGCCGATTACACCGAGCGT CGCCAACAGTTAAAGAGCAAGATGACTCAGGCGATGATCTACCCAGTGGTTCTTACCGTTGTCGCTATCAGTGTTATCGC TATCTTGCTTGCGGCGGTAGTGCCTCAAGTTGTTGGTCAATTTGAGCATATGGGCCAGGAGCTCCCCTGGACAACCTTGC TGCTTATCGCCTCTTCAGACTTTATCAGAGACTACGGCATTATCATTTTAGGCGCTGCTTTTGCGCTGTTTGTACTCTTT AAGCGTATGCTCACTAAGCCTGAATTTAGGATGAAATACGATTCTCTACTACTGACACTTCCTGTTATAGGCAGGGTGAG TAAGGGATTAAACACGGCGCGTTTTGCTCGTACTTTAAGTATCTTAACTGCCAGCTCTGTGCCTCTGCTCGATGCGATGC GTATCGCCAGTGAGGTCTTAGTCAATGTGAAAGTTCGAGCGGCAGTAGAGGAAGCAACAGCGCGAGTTCGTGAAGGAACC AGCTTAGGCGCTGCACTGACGAATACGAAACTTTTTCCGCCTATGATGCTCTATATGATCACCTCGGGTGAAAAGAGTGG ACAGCTAGAGCAGATGCTTGAGCGCGCTGCCGATAACCAAGATAGAGAGTTTGAGTCCAATGTGAATATCGCTTTGGGTG TTTTTGAGCCTCTATTAGTGGTGAGTATGGCCGCTGTGGTACTGTTTATCGTGCTGGCAATTCTGCAGCCAATCTTAGAG TTGAATAACATGATTAGTGGCTAG Protein sequence : MPAFEYKALDNKGKQQKGVMEADTARHARGQLRELRLMPLEIVPVVEKETKAKTGGKSLFQRGISVAELALITRQIATLV AAGLPVEEALKAVGQQCEKDRLASMIMAVRSRVVEGYNLADSMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTER RQQLKSKMTQAMIYPVVLTVVAISVIAILLAAVVPQVVGQFEHMGQELPWTTLLLIASSDFIRDYGIIILGAAFALFVLF KRMLTKPEFRMKYDSLLLTLPVIGRVSKGLNTARFARTLSILTASSVPLLDAMRIASEVLVNVKVRAAVEEATARVREGT SLGAALTNTKLFPPMMLYMITSGEKSGQLEQMLERAADNQDREFESNVNIALGVFEPLLVVSMAAVVLFIVLAILQPILE LNNMISG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 4e-84 | 55 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-83 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Swoo_4732 | YP_001763077.1 | general secretion pathway protein F | VFG2049 | Protein | 7e-81 | 56 |
| Swoo_4732 | YP_001763077.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-81 | 50 |
| Swoo_4732 | YP_001763077.1 | general secretion pathway protein F | VFG1870 | Protein | 3e-71 | 43 |
