|
Name : Swoo_4235 (Swoo_4235) Accession : YP_001762586.1 Strain : Shewanella woodyi ATCC 51908 Genome accession: NC_010506 Putative virulence/resistance : Virulence Product : KpsF/GutQ family protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : 5.3.1.13 Position : 5137550 - 5138527 bp Length : 978 bp Strand : + Note : KEGG: sse:Ssed_0731 arabinose-5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) DNA sequence : ATGGTAGATGTAACTCAACTTCGCCAATGGGGCAGAACTGTTATCGACATCGAGCGCAACGCACTCGATAACCTTTACCA GTACGTCGACTCGGAAGAGTTCACCCAAGCCTGTAAGCTAATTCTTAACTGTACAGGTAAAGTTATCGTAATGGGCATGG GTAAATCAGGTCATATCGGTAACAAGATCTCTGCAACATTAGCCAGCACTGGTACCCCAGCCTTCTTTGTTCACCCTGGA GAGGCGAGCCACGGAGATCTCGGCGTTCTCAGTGAAAATGATATTATCTTAGCCATATCAAACTCAGGTGAAGCCAGTGA GATACTCACCTTAATGCCTGTCATTAAACGCATGGGATTGCCAGTTATCGCTTGTACGGGAAACCCTGATTCAAATATGG CTAAACTCTCTGTTGTGCATCTGTGTATAGAGGTGCCAGAAGAGGCGTGTCCATTAGGGTTAGCACCAACATCGAGCACC ACAGCAACCTTAGTCATGGGCGATGCCTTAGCCGTTGCGCTTTTGCAAGCTAGAGGCTTTACCAAAGATGATTTTGCCCT CTCTCATCCCGGTGGTAGCTTAGGACGTAAGCTGCTACTTAAGGTCAGTGATGTGATGCATAAAGGCAAAGATCTGCCCT CGGTAAACCATGATATCTGCATCACTGAAGCCCTCTATGAGATCTCTAAAAAAAGCTTAGGTATGACAGCTGTCGTCGAT GAGGCAAATAAACTGGTAGGTATCTTTACCGATGGCGACCTAAGACGCGTTATCGACAGTGAAGTCAATCTTCGCACCAC CTCTATCAGTGATGTAATGTCTAAAGGGTGCGTCACTGTTTCTGCCGACATTTTAGCGGCTGCTGCACTGAAAGTGATGG AAGATAAAGATATTAATGGTTTGATCGTTATCGATGATCAGCAGCATCCAATAGGTGCCTTAAACATGTTAGATATGGTC AAGGCTGGCGTTATCTAA Protein sequence : MVDVTQLRQWGRTVIDIERNALDNLYQYVDSEEFTQACKLILNCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG EASHGDLGVLSENDIILAISNSGEASEILTLMPVIKRMGLPVIACTGNPDSNMAKLSVVHLCIEVPEEACPLGLAPTSST TATLVMGDALAVALLQARGFTKDDFALSHPGGSLGRKLLLKVSDVMHKGKDLPSVNHDICITEALYEISKKSLGMTAVVD EANKLVGIFTDGDLRRVIDSEVNLRTTSISDVMSKGCVTVSADILAAAALKVMEDKDINGLIVIDDQQHPIGALNMLDMV KAGVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 4e-56 | 43 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 3e-56 | 43 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 9e-56 | 43 |
