Gene Information

Name : Swoo_2897 (Swoo_2897)
Accession : YP_001761265.1
Strain : Shewanella woodyi ATCC 51908
Genome accession: NC_010506
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 3542330 - 3543070 bp
Length : 741 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1697 ABC transporter related

DNA sequence : 
ATGTCAGAAATCAGTGCAATCACAGTAAAGGCTCTCGTTAAATCAGTGGCTACCCAAGAGGGAGAGCTTACTATCCTCAA
CGGCATTAATATGGATGTCAAGCAGGGACAGAGTATTGCGATACTCGGTCCATCGGGCTCGGGTAAGTCAACCTTACTTG
GATTACTCGCCGCCCTTGATTCACCAAGCAGCGGTGAGATCATACTCGATGGTGTGGCGTTACACTCATTGAATGAAGAG
AAGAAAGCTGCACTGAGAAAACAGAAGGTCAGCTTTATTTTTCAATCCTTTATGTTGGTTGATACCCTCAATGCGTTAGA
GAATGTCATGTTGCCTGCTGAGCTTGCTGGCATTAATAATGCGAAGGAGAAAGCGCAGTCCATGTTAGAAAGGGTGGGGC
TAAGTCACCGACTGACTCACTTCCCAAATCAACTCTCCGGCGGTGAACAGCAAAGAGTGGCCATTGCAAGGGCCTTTATT
TGTGAACCTAAAGTGCTGTTTGCCGATGAACCGACTGGAAATCTGGACGCAGCCAATAGCCAGAAAGTTGCCGATATGCT
GTTTGAGCTTAATCGAGAAAGTGACACAACATTAGTGCTGGTTACCCACGATCTTGCATTAGCTAAACGTTGTGAGCGGC
AACTACTGATGAACAGTGGTGAACTGAGCGAAGACTCTGAGATGGAGACTCAAAAGAGGGCTCATAAACCAGTTAGTCTG
CATAGTGTGGGAGTGAGCTAA

Protein sequence : 
MSEISAITVKALVKSVATQEGELTILNGINMDVKQGQSIAILGPSGSGKSTLLGLLAALDSPSSGEIILDGVALHSLNEE
KKAALRKQKVSFIFQSFMLVDTLNALENVMLPAELAGINNAKEKAQSMLERVGLSHRLTHFPNQLSGGEQQRVAIARAFI
CEPKVLFADEPTGNLDAANSQKVADMLFELNRESDTTLVLVTHDLALAKRCERQLLMNSGELSEDSEMETQKRAHKPVSL
HSVGVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-26 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swoo_2897 YP_001761265.1 ABC transporter-like protein NC_012469.1.7686878. Protein 5e-32 43
Swoo_2897 YP_001761265.1 ABC transporter-like protein NC_008702.1.4606598. Protein 2e-28 42