Gene Information

Name : Swoo_0289 (Swoo_0289)
Accession : YP_001758685.1
Strain : Shewanella woodyi ATCC 51908
Genome accession: NC_010506
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 357117 - 357848 bp
Length : 732 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_0485 two component transcriptional regulator, winged helix family protein

DNA sequence : 
ATGAATGGAACACGTACAGCGAATAATCAATATACTCACAAAATTTTACTCGTTGAAGATGAGCCGGATCTTGCGAATTT
AGTCAAACTCAACCTCAACACTCTCAATTTTGATGTTATTCACTGCACTACCCTAAAGCAGGCAAACCAAAACCTAGAGC
TTAAGAGTTTTGATCTTATCTTAATCGATCGAACCCTTCCTGATGGAGATGGACTTATGCTGTGCCAACAACTTCGTCAT
GCTGGAAAAGAGACACCTTGCATGATGTTGACAGCCAAAGACTCTGAAGCAGATATCGTGCTGGGGCTTGAATCTGGAGC
TGATGACTACCTGACAAAACCATTTAGTGTGCTTGAGCTTAGGGCCAGGGTAAAAGCCCTGCTTAGACGAGGCCATCAAA
CTGAACATGAAGAGCAACAGTTGGACTTCAATGGTATTACTATCAACTGTGACACGCGAGAAGTTATCGCCTTCGACACA
CAACTTGAGTTAACCGCCAGAGAGTTTGACCTCCTCCTGTTTATGGCTAAGCACCCTAAGCAGGTATTTAGTCGATTGCA
GCTATTAGAAGCCGTTTGGGGTTACTCCTACTCAGGCTATGAACATACAGTAAATAGCCATATAAACCGCCTACGTGCCA
AGCTATCCCATTGCACTCCCGCTGCTGAGCTTGTTAAAACAGTATGGGGAGTAGGCTATAAATTCTCACCACCAGAAACA
CGGTCACATTAA

Protein sequence : 
MNGTRTANNQYTHKILLVEDEPDLANLVKLNLNTLNFDVIHCTTLKQANQNLELKSFDLILIDRTLPDGDGLMLCQQLRH
AGKETPCMMLTAKDSEADIVLGLESGADDYLTKPFSVLELRARVKALLRRGHQTEHEEQQLDFNGITINCDTREVIAFDT
QLELTAREFDLLLFMAKHPKQVFSRLQLLEAVWGYSYSGYEHTVNSHINRLRAKLSHCTPAAELVKTVWGVGYKFSPPET
RSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 9e-46 45
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-45 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_012469.1.7686381. Protein 1e-39 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_014475.1.orf0.gen Protein 3e-34 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_005054.2598277.p0 Protein 3e-34 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_002951.3237708.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_007622.3794472.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_002758.1121668.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_009641.5332272.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_013450.8614421.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_007793.3914279.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_003923.1003749.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_002745.1124361.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_009782.5559369.p0 Protein 1e-41 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator AE000516.2.gene3505. Protein 2e-34 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator FJ349556.1.orf0.gene Protein 1e-37 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator NC_012469.1.7685629. Protein 2e-38 41
Swoo_0289 YP_001758685.1 two component transcriptional regulator HE999704.1.gene2815. Protein 2e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swoo_0289 YP_001758685.1 two component transcriptional regulator VFG1702 Protein 4e-46 45
Swoo_0289 YP_001758685.1 two component transcriptional regulator VFG1563 Protein 2e-45 45
Swoo_0289 YP_001758685.1 two component transcriptional regulator VFG1389 Protein 8e-27 41