Gene Information

Name : Swoo_2645 (Swoo_2645)
Accession : YP_001761017.1
Strain : Shewanella woodyi ATCC 51908
Genome accession: NC_010506
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 3241305 - 3242264 bp
Length : 960 bp
Strand : -
Note : TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: sdn:Sden_1131 integron integrase

DNA sequence : 
ATGGGGCAAGCAACATACATTGAGGCTATACGTGCTGAGATAAGGGTACGTCATTATAGCTATCAAACAGAAAAGTCTTA
TCTTTATTGGAATCGATACTTTATAAGACATTGCAATATTCGTCATGGTGATGATATTACGCCAGCTTTGATTGAACATT
TTCTGTGTTTTTTAGCTGTACAATGCAAAGTGTCGGCTAGCACTCAGAAACAAGCTTTGTGCGCGATTATATTTGCTTGT
CGCCACGTATTGAAAATAGAGACTAAAGAGCTGCAATTTCCCTATGCAAAAACTCCGCAACGGATACCACAGGTACTTTC
TAGCGATGAAGCAAAACTGATTATCAGTTTCTTATCAAATTATCATCATCTAATCGGTTCTATACTATTTGGAGCGGGAT
TAAGGCTAAAAGAGGCATTAAGACTCAGAATAAAAGATATTGATTTAAGCACGAAGTCTATCTTTGTCTACCAAGGAAAA
GGGCAAAAAGATCGAGTTTGTATGCTACCTAATGGCTTGGTCGATGAGTTAACATTACAAATGTCACATGTTAAAAAGAT
ACATGATAGGGATCTTGTTGAAGGTTTTGGTTTAGCTTCTTTGCCCATATCTCTTATCAAAAAGTATCGTAGCAGTGCCG
CTAAATTTCACTGGCAGTATATCTTCCCTGCGAGTCGCCGCTGTATACATCCAAGCGATGAATATACGTGCCGACATCAT
ATTCATCCTACTGCATTTTCAAGAGAATTGAGAAAAGCGACTACCAAGAGTAATACCAATAAGCGCGTTACTGCGCACAC
TTTTCGTCATTCATTTGCTACATCATTATTACTTAAAGGTCATGATATTCGTACTATTCAAGAACTATTAGGTCATAGTG
ATGTCAAGACTACCCAAATATACACTCATGTTATTGGCGGGCATCATACTGGTGTGATAAGTCCTCTAGACAATTTATAA

Protein sequence : 
MGQATYIEAIRAEIRVRHYSYQTEKSYLYWNRYFIRHCNIRHGDDITPALIEHFLCFLAVQCKVSASTQKQALCAIIFAC
RHVLKIETKELQFPYAKTPQRIPQVLSSDEAKLIISFLSNYHHLIGSILFGAGLRLKEALRLRIKDIDLSTKSIFVYQGK
GQKDRVCMLPNGLVDELTLQMSHVKKIHDRDLVEGFGLASLPISLIKKYRSSAAKFHWQYIFPASRRCIHPSDEYTCRHH
IHPTAFSRELRKATTKSNTNKRVTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTQIYTHVIGGHHTGVISPLDNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int1 YP_005160012.1 integrase Not tested Not named Protein 1e-47 42
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 8e-43 41
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 2e-56 41
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 2e-56 41
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 3e-55 41
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 2e-56 41
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 2e-56 41
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 2e-56 41
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 1e-56 41
intI1 AAK02045.1 integrase Not tested SGI1 Protein 2e-56 41
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 2e-56 41
intI YP_001844881.1 integrase Not tested AbaR20 Protein 3e-56 41
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 1e-56 41
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 2e-56 41
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 2e-56 41
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 3e-56 41
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 2e-56 41
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 2e-56 41
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 3e-56 41
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 2e-56 41
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 2e-56 41
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 3e-56 41
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 2e-56 41
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 2e-56 41
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 2e-56 41
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 2e-56 41
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 2e-56 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swoo_2645 YP_001761017.1 integron integrase VFG1028 Protein 2e-55 41