Gene Information

Name : Swoo_2529 (Swoo_2529)
Accession : YP_001760901.1
Strain : Shewanella woodyi ATCC 51908
Genome accession: NC_010506
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 3091052 - 3091540 bp
Length : 489 bp
Strand : -
Note : TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: vch:VCA0107 hypothetical protein

DNA sequence : 
ATGGCAAAAGATGGCACAGTTGCGCCTAAAGAACGTATTAATATTAAATATGTTCCCTCTACAGGTGATCAACAGGCGGA
AATGGAACTTCCACTCAAGATGTTGATTGTGGGTGATTTTAAAGGTCACGCAGAAGATACACAGCTTGAAGAAAGACAAT
CAGTATCTGTAAATAAAACAAACTTCGAATCAATAATGAAAGAAAGCGGCCTATCTGTTAATACAACGGTTGCGAATAAA
TTAACTGACAATGAATCTGACGAGTTAAATGTAGAATTAAACTTCAGTTCCATGAAAGATTTCTCTCCTGATGCCATCGC
TACACAAGTCCCTGAAATAAACAAACTCATTGAGCTAAGAGAAGCCCTTGTCGCTTTAAAAGGCCCATTAGGTAATATCC
CATCATTTAGAACCAAGCTGCAGGAATTGATTGAGACCGAGGATTCTCGTGAACAACTTTTAGCAGAACTTCAAACTCTA
GATAACTAG

Protein sequence : 
MAKDGTVAPKERINIKYVPSTGDQQAEMELPLKMLIVGDFKGHAEDTQLEERQSVSVNKTNFESIMKESGLSVNTTVANK
LTDNESDELNVELNFSSMKDFSPDAIATQVPEINKLIELREALVALKGPLGNIPSFRTKLQELIETEDSREQLLAELQTL
DN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 6e-36 50
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 4e-39 49
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 3e-39 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swoo_2529 YP_001760901.1 type VI secretion protein VFG2092 Protein 5e-57 70
Swoo_2529 YP_001760901.1 type VI secretion protein VFG2474 Protein 9e-39 50