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Name : Swoo_2520 (Swoo_2520) Accession : YP_001760892.1 Strain : Shewanella woodyi ATCC 51908 Genome accession: NC_010506 Putative virulence/resistance : Virulence Product : type VI secretion ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3079716 - 3082307 bp Length : 2592 bp Strand : - Note : KEGG: vco:VC0395_0021 ClpB protein; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase DNA sequence : ATGATCCGTATTGAATTAAGTACGCTTATTACTAAGTTAAATCCAATCAGCAAGCTTGCTATGGAAGAGGCGGCTTCTTT GTGTATCGCGAGGCAGAATGAGGAGATAACCCTATCTCATCTGCTGTATAGCTTGTTAGAAAATCCACTGTCCGATGTGA GAGTACTACTTAAGCACGCTGAGTGTGACATTAGTGAGCTAAAAACACTTTTAGGTAATAGTTTACCAACTGGGGATACC TTAGATACCTACCCATCATTTTCTCCACTTTTAGTTGAGTTACTGCAAGATGCTTGGTTGCTGTCCACCACTGAATTACA AGAGGCTGAGCTGAGATCCGGTAGCCTTTTCCTCGCCGCATTAATGCAATCGAGCCGTTACCTCCCTTTTGAGCTTGTTA ATTTCTTCGCTGATATTAACCGAGAATCATGGCGTAAAAATTTCGCAAGATTAACAGCTAGCTCTTCAGAATCGAAAGCG CGCGAAGCCTCTACTGGCCGTCAGCCTGTGCAAGATAGTGCCAACAGTGCATTAGATAAATTCACCACTAACTTTACTCA ATTTGCAGAGGATGGCGAGTTAGACCCAGTGCTGTGCCGTGACGATGAGATCAACCTGATGATTGATATTCTATGTCGCC GCCGTAAAAACAACCCTATCGTTGTCGGTGATGCCGGTGTGGGTAAAAGCGCTGTGGTAGAGGGACTGGCTTTGCGTATT GTTGCTGGTAATGTGCCTGATTCCTTAAAAGGAGTGCAACTGCTGTCGCTGGATTTAGGCTTACTTCAAGCTGGAGCTTC GGTGAAAGGGGAGTTTGAAAAGCGTTTAAAAGGGGTGATTGATGAAGTTAAAAACTCAGCCATTCCCATTATTCTTTTTA TCGATGAAGCACACACCTTAATCGGCGCTGGCAATCAAGAGGGGGGAGGCGATGCCGCCAACTTGCTAAAACCTGCCTTA GCACGGGGTGAGTTACGTACAATTGGTGCAACGACGTGGAAAGAGTACAAGAAATATTTTGAAAAAGATCCCGCGCTCAC TCGCCGTTTTCAGTTGGTAAAATTGGATGAACCTAGCGCCGAACAAGCGGTTGTGATACTGCGTGGTCTACATGGTGTGT ACGAGTCTGAACATAAAGTGTTGATCCAAGATTGCGCGCTGAAAGCTGCGGCGCATCTATCAAGTCGTTACCTTTCTGGG CGACAACTGCCAGATAAAGCCATCGATGTGCTCGATACTGCATGTGCGCGCATTGCCATTAATCTTACCTCTCCACCTCG ATATCTTGCAGAGCTGCAAGGCATTATTCATCAGACAGAAGTGGAGATCTCACTGTTATTGAGACAGAGAACCATAGGCC AGAGTATTGATGAGGAGCATCTTGAGCTATTAAGAGAACGAGTGACGGATGCAATGTCAGAGCATGAATCATTAGAGTCG ACTTGGAGGCAGCAGCAGGAGCTAGTCTCTAAAATCATCGAGCTGAGAGGCGCGATATTAGCAGGTGACGCTGATGATGT GCCCCAAGAGTTGTGTATTGAACTCAATGACGTTGAGGAGCAACTTGAGTTACTTAGTGCCAAGAATCGTTTAGTTATTC CCCAGGTGGATGAACAGCAAATTGCGGCTGTGATTGCTGATTGGACCGGTGTGCCAGTTGAGCAGATGAACAGCGATGAG CTGCATAAAATCACCCATCTGCCTCAGCTGCTTGGAGAGTCATTAAAAGGACAAGATATCGCCATCTCTCGTCTGCATCA AAATATGCTGACAGCAAGAGCCGATCTGCGTAAAGCTGGTCGTCCCAAAGGTGCATTTTTGCTCGTTGGTCCAAGTGGTG TGGGTAAAACCGAGACCGTGATTCAAATTGCTGAGCAGCTCTATGGCGGTAAGCAGTTTCTAACGACAATCAATATGTCC GAATACCAAGAGAAGCACACGGTATCTCGATTAATTGGCTCACCTCCAGGATACGTTGGCTTTGGTGAAGGAGGTGTATT AACTGAATCCATTCGTAAAATGCCTTACTCCATTGTACTGCTCGATGAAGTTGAGAAGGCGCACCCCGATGTGTTGAACC TTTTCTATCAAGCATTCGATAAAGGGGAGCTTGCCGATGGTGAGGGGCGTCTTATCGATTGTCAGAATATTCTCTTCTTT TTGACCTCCAACTTAGGCTATCAAACCATCGTTGATAATGCACAAACGCCAGAGCTGATTGAGAACAGTCTCTATCCTGA GCTTTCGGCATTTTTTAAACCTGCTCTGCTTGCTCGTATGGAGGTTGTGCCCTATCTACCACTTGGTGAAAACGTGCTGC GTGAAATTATTGCTGCCAAGTTAGCCGCGCTGACCCAACGACTTGAGCTTAGATATAAAGCACAGGTGAGCTGCGATCAA GCACTTACCGATGAGATCATCAGACGGACAACCCGTACTGAAAATGGTGCGCGTATGTTAGAGGCGATCATCGATGGTCA GATGTTACCTCCTATTGCATTGGCTCTGCTTAATAAATTAGCAGATAAAGAGCCTGTGCAAACCATTCGATTAAGTTGTG TTGATGGTGAGTTTGTCGGAGAGGTGAGTTAG Protein sequence : MIRIELSTLITKLNPISKLAMEEAASLCIARQNEEITLSHLLYSLLENPLSDVRVLLKHAECDISELKTLLGNSLPTGDT LDTYPSFSPLLVELLQDAWLLSTTELQEAELRSGSLFLAALMQSSRYLPFELVNFFADINRESWRKNFARLTASSSESKA REASTGRQPVQDSANSALDKFTTNFTQFAEDGELDPVLCRDDEINLMIDILCRRRKNNPIVVGDAGVGKSAVVEGLALRI VAGNVPDSLKGVQLLSLDLGLLQAGASVKGEFEKRLKGVIDEVKNSAIPIILFIDEAHTLIGAGNQEGGGDAANLLKPAL ARGELRTIGATTWKEYKKYFEKDPALTRRFQLVKLDEPSAEQAVVILRGLHGVYESEHKVLIQDCALKAAAHLSSRYLSG RQLPDKAIDVLDTACARIAINLTSPPRYLAELQGIIHQTEVEISLLLRQRTIGQSIDEEHLELLRERVTDAMSEHESLES TWRQQQELVSKIIELRGAILAGDADDVPQELCIELNDVEEQLELLSAKNRLVIPQVDEQQIAAVIADWTGVPVEQMNSDE LHKITHLPQLLGESLKGQDIAISRLHQNMLTARADLRKAGRPKGAFLLVGPSGVGKTETVIQIAEQLYGGKQFLTTINMS EYQEKHTVSRLIGSPPGYVGFGEGGVLTESIRKMPYSIVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRLIDCQNILFF LTSNLGYQTIVDNAQTPELIENSLYPELSAFFKPALLARMEVVPYLPLGENVLREIIAAKLAALTQRLELRYKAQVSCDQ ALTDEIIRRTTRTENGARMLEAIIDGQMLPPIALALLNKLADKEPVQTIRLSCVDGEFVGEVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 0.0 | 57 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 0.0 | 57 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 3e-128 | 43 |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 6e-100 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Swoo_2520 | YP_001760892.1 | type VI secretion ATPase | VFG2084 | Protein | 0.0 | 67 |
| Swoo_2520 | YP_001760892.1 | type VI secretion ATPase | VFG2076 | Protein | 6e-149 | 43 |
