Gene Information

Name : Swoo_2254 (Swoo_2254)
Accession : YP_001760630.1
Strain : Shewanella woodyi ATCC 51908
Genome accession: NC_010506
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 2767223 - 2768743 bp
Length : 1521 bp
Strand : -
Note : PFAM: Aldehyde Dehydrogenase; KEGG: pin:Ping_2539 aldehyde dehydrogenase (NAD(+))

DNA sequence : 
ATGATTTATGCATATCCGGGTAGCGACAATTCAATAGTTTCTTTTAAAGCGCAATATGAAAACTTTATCGGTGGTAAGTG
GGTACCGCCAGTAAAAGGCGTCTATTTTAGCAATACGACCCCAGTTACCGGTGAAGAGTTTTGTAAAATACCTCGCTCAT
GCGCACAAGATATTGAGCTTGCATTAGATGCTGCTCACAGCGCTAAAGAAGCATGGGGCAACACCTCAGTACAAGAGCGC
TCAAACATCTTATTAAAGATTGCCGATCGCATCGATGAAAATCTAGAGGCTTTGGCCGTCGCTGAGACGTGGGATAACGG
TAAAGCCGTACGTGAAACCTTAGCTGCAGATCTGCCATTAAGCTCAGATCATTTCCGCTACTATGCAGGATGTATCCGTG
CTCAAGAAGGCACCCTGTCAGAGATAGACAAAGACACAGTAGCTTACCACTTCCATGAGCCACTAGGGGTTGTCGGTCAG
ATTATCCCCTGGAACTTCCCACTACTGATGGCAGCATGGAAGCTAGCTCCAGCATTGGCTGCAGGAAACTGCATTGTGCT
TAAACCTGCTGAGCAAACCCCTGCGAGTATTTTGCTGCTAATGGAGTTAATTGAAGATCTACTACCTGCTGGGGTACTGA
ACGTAGTCAATGGCTATGGTAGAGAGGCCGGGGAAGCACTGGCCACCAGCACTCGTATCGCTAAAATCGCCTTTACAGGC
TCTACGGCAGTAGGTGGACACATCTTAAAATGTGCAGCTGAGAACTTAATCCCCTCTACGGTCGAGTTAGGCGGTAAGTC
ACCTAACATCTATTTTGGTGATGTGACTCAGCATGAAGATGATTATCTTGATAAGTGCGCCGAAGGTTTTGTATTAGGCT
TCTTTAACCAAGGTGAGGTCTGTACCTGTCCATCTCGCGCATTAGTGCAGGAAGATATCTTCGATGAGTTTATGGCTAAA
GTGCTACAAAAAACCAAAGAGATCATACGTGGCAACCCACTCGACACCACCACTATGGTTGGTGCTCAAGCATCCCAAGA
GCAGTTTGATAAGATCATGGGTTACTTGAAAATAGGCAATCAAGAGGGAGCAAAAGTATTAACTGGCGGCGATCAGGAAA
ACTTAGAAGACTCGCTTGGAAATGGTTTCTATGTACAACCGACTATTCTCCAAGGAGATAACTCCATGAGAATCTTCCAA
GAGGAGATCTTTGGCCCTGTGATAGCGGTAACCACCTTTAAAGATGAGGCTGAAGCGCTAGCCATCGCAAACGATTCAGC
TTACGGTTTAGGTGCTGGTGTTTGGACACGTGATACTAACCTTGCCTACCGAATGGGACGAGGCCTACAAGCAGGACGTG
TATGGACAAACTGTTACCATCTCTATCCCGCTCATGCCGCATTCGGTGGTTATAAGAAATCCGGTATTGGTCGTGAGACA
CATAAGATGATGCTAGATCATTATCAGCAAACTAAGAACCTGCTCGTGAGCTACAGTACTAGCCCACTCGGTTTCTTCTA
G

Protein sequence : 
MIYAYPGSDNSIVSFKAQYENFIGGKWVPPVKGVYFSNTTPVTGEEFCKIPRSCAQDIELALDAAHSAKEAWGNTSVQER
SNILLKIADRIDENLEALAVAETWDNGKAVRETLAADLPLSSDHFRYYAGCIRAQEGTLSEIDKDTVAYHFHEPLGVVGQ
IIPWNFPLLMAAWKLAPALAAGNCIVLKPAEQTPASILLLMELIEDLLPAGVLNVVNGYGREAGEALATSTRIAKIAFTG
STAVGGHILKCAAENLIPSTVELGGKSPNIYFGDVTQHEDDYLDKCAEGFVLGFFNQGEVCTCPSRALVQEDIFDEFMAK
VLQKTKEIIRGNPLDTTTMVGAQASQEQFDKIMGYLKIGNQEGAKVLTGGDQENLEDSLGNGFYVQPTILQGDNSMRIFQ
EEIFGPVIAVTTFKDEAEALAIANDSAYGLGAGVWTRDTNLAYRMGRGLQAGRVWTNCYHLYPAHAAFGGYKKSGIGRET
HKMMLDHYQQTKNLLVSYSTSPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-153 69
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 3e-163 68
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 3e-163 68
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 3e-163 68
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-162 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swoo_2254 YP_001760630.1 aldehyde dehydrogenase VFG0082 Protein 8e-154 69