|
Name : Swoo_1680 (Swoo_1680) Accession : YP_001760060.1 Strain : Shewanella woodyi ATCC 51908 Genome accession: NC_010506 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2087011 - 2088939 bp Length : 1929 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: sbl:Sbal_2876 polysaccharide biosynthesis protein CapD DNA sequence : ATGGATTTTTTTCAGGTGTTATTCTCTTTAAATCGAACTTATAAGCGATTAGTTAGTGTTGGAATCGATACTGTTTGTTT GCTGGCTTCATTTTGGTTGGCGCTAATGGTTCGGACTGATTCAGTTACCGCTTTTGGCAATCAAGGGTACTGGCTTCTTA TTGGCTTAGTTTGGCCTATTAGTATCATTGCTTTTATGAAGTTGGGTCTATATCGAGCGGTACTTAGGTATTTAAGTCTT CAAGCATTAACCGCTATCTTGTTAGGTGTACTGATATCTACAGTTAGTCTGGTGTTTATCTCATACTTTGCCAATTTAGG CTTACCTCGTACAGTTCCCGTTATTTATGCTGCTTTTGCTTTAGTCTTGATTGGGGGCTCAAGAGGGGTGATACGAGCCG CTGTTGGTTCAGGAATGAAGCGGGAAGGTGAACCAGTTATTATCTATGGCGCAGGCGTTAGCGGCAGGCAACTCGTCACT GCTTTAGTTCAAAGTCACGAATACTATCCTTTTGCTTTTGTTGATGATGATGTGACAACCCATGGCAGTGTTATTCAAGG TGTGCATGTTCACTCTCCTTCGATAGTGCGTAAGCTGATAAAGCAAAAGCAGGCGACTAAGGTGCTGCTTGCTATTCCAA GTGCCTCTCGTCAGAGAAGAAAAGAGATTTTACTCTCTCTTGAACCTTTAGCTGTCCAAGTTTTAACACTGCCTGCAATG GCTGATTTGGTAAGCGGCAATAAGCTTTATAGCGACATTAAAGAGGTGGAGATAGATGATCTGTTGGGTCGCGATGCCGT TTCCCCAAGAGAAGACTTACTCAAAGATAATATTACAGACAAAGTCGTGATGGTCACAGGAGCTGGTGGCTCTATTGGTT CTGAGCTTTGTCGTCAGATATTGAAGCAAAGGCCCAGTAAACTTGTTCTGTTTGAGCTGTCAGAGTTTGGTTTGTACTCA ATAGAGAAAGAGCTATCTGCAACGGCTATAGAGAATGGGCTTGATGTTGAGATATTTCCAATGCTTGGCTCTGTGCAGAG AGAGAATCGTGTTCAGGCCGTAATGGAGTCATTTCAAGTTCAGACTGTATATCATGCAGCAGCGTACAAACATGTGCCTT TAGTCGAACATAATGTGGTCGAAGGCGTACGTAATAACGTATTTGGTACCATGTATACTGCTCGTGCTGCCATTGCTGCT AAAGTCGAAACATTTGTACTTATCTCAACGGATAAGGCGGTACGTCCAACAAATGTGATGGGAACAACAAAGCGTATGGC GGAGTTATCCTTACAAGCTTTAGCCAAGGAGTCTCATGCTACTCGTTTTTGTATGGTGCGATTTGGTAATGTTTTAGGTT CATCTGGCTCTGTCGTACCTCTGTTTAGAAAACAGATTGCATCTGGCGGGCCTGTTACCGTTACTCACCCGGAAATTACT CGCTTTTTTATGACCATTCCAGAAGCTTCGCAACTTGTTATTCAAGCTGGCGCTATGGGGAAAGGTGGAGATGTCTTTGT TTTGGATATGGGGGAGTCTGTAAAAATTGTAGACTTAGCGGCTAAGATGATTCGTTTAAGTGGTTTTGAAGTTCAAGACT CTATCAACCCTGATGGTGATATCTCTATTGAGTTTAGTGGGTTGCGGCCTGGTGAAAAACTGTATGAAGAGTTGCTAATA GGTGATGATGTTACCGGTACAGAGCATGAGCGGATCATGACAGCCAATGAAGCCTATCTTTCTTGGGATGAGCTAGAAGT TATTTTGAGTAAGCTTGATATGGCATGTCATGAATTTAACCATGAAGTTATTCGGGAAATTTTGTTAACAACGCCTACAG GTTTTAATCCAACGGATGGCATCTGCGATCTGGTTTGGAAAGTGAAGAATGAGCAGCAAGGCACAAAAGTTGTGTCATTA GTATCTTAA Protein sequence : MDFFQVLFSLNRTYKRLVSVGIDTVCLLASFWLALMVRTDSVTAFGNQGYWLLIGLVWPISIIAFMKLGLYRAVLRYLSL QALTAILLGVLISTVSLVFISYFANLGLPRTVPVIYAAFALVLIGGSRGVIRAAVGSGMKREGEPVIIYGAGVSGRQLVT ALVQSHEYYPFAFVDDDVTTHGSVIQGVHVHSPSIVRKLIKQKQATKVLLAIPSASRQRRKEILLSLEPLAVQVLTLPAM ADLVSGNKLYSDIKEVEIDDLLGRDAVSPREDLLKDNITDKVVMVTGAGGSIGSELCRQILKQRPSKLVLFELSEFGLYS IEKELSATAIENGLDVEIFPMLGSVQRENRVQAVMESFQVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTMYTARAAIAA KVETFVLISTDKAVRPTNVMGTTKRMAELSLQALAKESHATRFCMVRFGNVLGSSGSVVPLFRKQIASGGPVTVTHPEIT RFFMTIPEASQLVIQAGAMGKGGDVFVLDMGESVKIVDLAAKMIRLSGFEVQDSINPDGDISIEFSGLRPGEKLYEELLI GDDVTGTEHERIMTANEAYLSWDELEVILSKLDMACHEFNHEVIREILLTTPTGFNPTDGICDLVWKVKNEQQGTKVVSL VS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-81 | 47 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 4e-83 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Swoo_1680 | YP_001760060.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-125 | 51 |
| Swoo_1680 | YP_001760060.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 4e-84 | 45 |
