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Name : Swoo_0153 (Swoo_0153) Accession : YP_001758549.1 Strain : Shewanella woodyi ATCC 51908 Genome accession: NC_010506 Putative virulence/resistance : Unknown Product : RNA-binding S1 domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 185932 - 188340 bp Length : 2409 bp Strand : + Note : PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sse:Ssed_0173 RNA binding S1 domain protein DNA sequence : ATGACTTGTGGTATCTTGGGCGCCACTACGTTTTTTACTCTAGGCTCGACACTACTTCCTATGCAAATGACGCAAAATAT CGCCCAAATCATAGCTCAAGAACTCAATGTTCGTGAGCAACAGGTCTCCGCCACTATCGCTCTTTTAGATGATGGTTCTA CGGTCCCATTTGTTGCCCGTTACCGTAAAGAGGCGACAGGGGGGCTTGATGATACTCAGCTACGTACTTTAAATAGTCGC TTGAGTTACCTGCGTGATCTTAATGATAGGCGAGAAGTGATTCTGTCGAGTATCGATGCTCAAGGTAAGTTAACTCCTGA GTTGAGAAAATCCCTGTTTGATGCTGATAGCAAGACGCTTCTGGAAGATCTTTATCTGCCCTATAAACCAAAGCGTCGTA CTAAAGGTCAGATTGCCATTGAAGCGGGTATCGAGCCATTAGCCGATCTACTACTGGGTAATAGAGGCGCCGACATAGAA GCTGAAGCGGGTAAATACATACAGGCTGAAGCTGGTTTTTCTGATACTAAGCTAGTGTTGGATGGTGCTCGTTTTATCCT GATGGAAAGATTTGCTGAAGATGCGATTCTGCTTCAGAAAGTGAGACGACACCTAACTGAGAACTCAGTGCTAGAAAGTC GCGTAACTAAAGGTAAAGAGCAGGAAGGTGCTAAGTTCCGTGACTATTTCGAGCATACTGAAAAGCTAACTAAAATCCCA TCTCACCGTGCACTTGCAATGCTTAGGGGCCGTAACGAAGGCGTACTTAGTTTGAGCATGAATGCTGATCCCAGCAATGA ATCTAAGCGTGGTAGCTACTGTGAAGTGATCATTGCTGACCATTTTAAGCTTAATCTTGGAGCTGGGGATGTCGATGCTT GGCTGAAAACTGTGGTTACAGCAACTTGGCGCATAAAAATTGCTCTGCAGATGGAGAATGAGTTTATAGCTAAGATGCGT GAACTTGCAGAGTCTGAAGCAATCAATGTATTTGCTCGTAACTTGGGCGATCTCTTGATGGCACCGCCAGCGGGAGCTAA GGCGACATTAGGGCTAGATCCTGGTCTAAGAACTGGAGTGAAGGTTGCGATTGTCAACAATACGGGCAAGTTAGTCGCCC ACACGACAATTTTCCCTCATGCGCCTCAAAATCAGTGGGATAAGTCCGTTCGTACTTTAGCCAACTTGGCAAAAATGCAT AAAGTTGAGTTGATAGCTGTGGGTAATGGCACGGCGTCAAGAGAGACAGATAAACTGGCGGGTGAACTTATCGCTGCCGT CAGAGATGAACTGCCTAAGATCACCAAGATCATGGTGAGCGAAGCAGGAGCATCGGTTTACTCTGCTTCTGAGCTTGCTG CCGATGAGTTTCCAGATCTAGATGTGTCTATTCGTGGCGCGGTTTCGATTGCACGACGTTTACAAGACCCGCTTGCTGAG CTGGTTAAGATCGAACCTAAATCTATCGGGGTCGGCCAGTATCAGCATGATGTCAGTCAAAGCCAACTTTCATTATCTCT TGAGAGTGTTGTTGAAGATTGCGTAAACAGTGTTGGGGTTGATCTAAATATGGCGTCTGCGCCATTACTGGCTCAGGTTG CTGGTCTTAATAAGACACTTGCAAGAAATATCGTGACCTACCGTGATGACAATGGTGAGTTTACTGAGCGCAAACAGTTG CTTAAAGTTGCTCGGCTAGGCCCTAAAGCCTATGAGCAAGCGGCAGGTTTCTTACGTATTTTGAATGGAAAAAATCCGCT AGATGGCTCATCGGTTCACCCAGAAGCGTACTCTTTGGTAACCGCTATTGCCACGGCTAAAGGGCAAGCGCTTGATAGCT TGGTGGGGAATAGTGAGCTGCTTAAAAGCCTCAATGCTGCCGACTATATTACTGACAAGTTTGGTCTGCCAACGGTGACA GATATCTTAGCTGAGTTAGATAAACCTGGTAGAGATCCACGTGGTGAGTTTAAGACTGCTGCGTTTAAAGAGGGTGTTGA GAAGGTTAGCGATCTAAAACCTGAGATGATTTTAGAAGGGGTTGTGACAAATGTGACTAATTTTGGTGCATTTGTGGATG TGGGAGTTCATCAGGATGGGCTGGTACATATCTCATCGTTAACAGATAAGTTTGTTAGCGATCCCCATACCATAGTTAAA GCCGGTGACGTGGTTAAAGTGAAAGTCATGGAGGTGGACGCTGAGCGTAAGCGCATTGCATTGAGTATGCGTCTCGACGA GAAGCCTAGTGAAAAATCCACCAATCGTACAACCTCTAAGACGACGGGGGGCAAGCCTAATCACAATGGGGGCGGTAAAC CTCAAAACCGAGCTAAACAGAAACCTCAACCAGCCAATGCTGCTATGGGCAATGCCTTTGCTGACGCTTTTGCCAAACTA AAGAAGTAG Protein sequence : MTCGILGATTFFTLGSTLLPMQMTQNIAQIIAQELNVREQQVSATIALLDDGSTVPFVARYRKEATGGLDDTQLRTLNSR LSYLRDLNDRREVILSSIDAQGKLTPELRKSLFDADSKTLLEDLYLPYKPKRRTKGQIAIEAGIEPLADLLLGNRGADIE AEAGKYIQAEAGFSDTKLVLDGARFILMERFAEDAILLQKVRRHLTENSVLESRVTKGKEQEGAKFRDYFEHTEKLTKIP SHRALAMLRGRNEGVLSLSMNADPSNESKRGSYCEVIIADHFKLNLGAGDVDAWLKTVVTATWRIKIALQMENEFIAKMR ELAESEAINVFARNLGDLLMAPPAGAKATLGLDPGLRTGVKVAIVNNTGKLVAHTTIFPHAPQNQWDKSVRTLANLAKMH KVELIAVGNGTASRETDKLAGELIAAVRDELPKITKIMVSEAGASVYSASELAADEFPDLDVSIRGAVSIARRLQDPLAE LVKIEPKSIGVGQYQHDVSQSQLSLSLESVVEDCVNSVGVDLNMASAPLLAQVAGLNKTLARNIVTYRDDNGEFTERKQL LKVARLGPKAYEQAAGFLRILNGKNPLDGSSVHPEAYSLVTAIATAKGQALDSLVGNSELLKSLNAADYITDKFGLPTVT DILAELDKPGRDPRGEFKTAAFKEGVEKVSDLKPEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTIVK AGDVVKVKVMEVDAERKRIALSMRLDEKPSEKSTNRTTSKTTGGKPNHNGGGKPQNRAKQKPQPANAAMGNAFADAFAKL KK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 61 |
