|
Name : smpB (Mrad2831_1891) Accession : YP_001754569.1 Strain : Methylobacterium radiotolerans JCM 2831 Genome accession: NC_010505 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2018474 - 2018947 bp Length : 474 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCCCCGAAACCGGAGCCCAGTCGGCGCATCGTCGCCGACAACCGCGCCGCGCGCTATCACTACACGATCGAGGACAC GCTCGAGGCCGGCATCGCGCTGACCGGCACCGAGGTGAAGTCCCTGCGCGGCGGCAAGGCGACGATCGGCGAGGCCTATG CCGGACCCTCCGGCACCGACCTGATGCTGTTCAATGCCTACATCCCGGAATACCTGGAGGCGAACCGCTTCAACCACGAC ACCAAGCGCCCGCGCCGCCTGCTGCTGCACCGCCGCCAGATCAACAAGCTGATCGGCGCGACCCAGCGCCAGGGCTACAC GGTGGTGCCGCTGAAGATCTACTTCAACGACAAGGGACGGGCGAAGGTCGAGCTGGGTCTGGGCAAGGGCAAGCAGGCCC ACGACAAGCGCGAGGCGGTCAAGGAGCGCGACTGGCAGCGCGACCGGGCGCGGCTGATGCGGGACCGGGGCTGA Protein sequence : MAPKPEPSRRIVADNRAARYHYTIEDTLEAGIALTGTEVKSLRGGKATIGEAYAGPSGTDLMLFNAYIPEYLEANRFNHD TKRPRRLLLHRRQINKLIGATQRQGYTVVPLKIYFNDKGRAKVELGLGKGKQAHDKREAVKERDWQRDRARLMRDRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 8e-29 | 51 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 3e-25 | 49 |
