Gene Information

Name : UPA3_0187 (UPA3_0187)
Accession : YP_001752262.1
Strain : Ureaplasma parvum ATCC 27815
Genome accession: NC_010503
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 218021 - 218500 bp
Length : 480 bp
Strand : -
Note : identified by similarity to GB:ABP68568.1; match to protein family HMM PF02590

DNA sequence :
ATGATGATAAAAATTATAAGTGTAGGGAAATTAAAACAAAAAGCTTTTGTTGATCTAATTAATGATTATTTAAAAAGAAT
TAACCATTATTTAAAATGCCAAGAAATTGTTGTTAGCGATGAACCTGAACCAGTTCAAATTTCAAATAAATCCTTAGAAC
AAATTAAAAGTAAAGAGGCCTCTAAAATTTTTAAAAATATTAATCAAAATGATTTTGTAATTGCTTTAATTATTGAAAGC
AACATTATAAGTAGCGAAACATTAGCTAAAAAAATACAACAATGACTAAACACATTTTCTCATGATATTTGTTTCATTAT
TGGTGGATCTAATGGTTTACATGAAAGCATCTATGAGCGTGCTAATTATCATTTATCTATGTCAAAAATGACTTTTGCTC
ATGGCTTAGCAAAAGTCATGTTATGTGAACAAATATATAGGGCACTTAGTATTTTAAATAACGGAAAATATCATAAATAA

Protein sequence :
MMIKIISVGKLKQKAFVDLINDYLKRINHYLKCQEIVVSDEPEPVQISNKSLEQIKSKEASKIFKNINQNDFVIALIIES
NIISSETLAKKIQQWLNTFSHDICFIIGGSNGLHESIYERANYHLSMSKMTFAHGLAKVMLCEQIYRALSILNNGKYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 1e-31 46
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-31 46
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 8e-32 45
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 8e-32 45
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 8e-32 45
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 5e-32 45
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 8e-32 45
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 8e-32 45
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 9e-28 45
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 8e-32 45
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 8e-32 45
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 8e-32 45
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 8e-32 45
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 6e-32 45
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 8e-32 45
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-31 45
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 8e-32 45
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-31 45
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 1e-22 44