|
Name : PputW619_4347 (PputW619_4347) Accession : YP_001751196.1 Strain : Pseudomonas putida W619 Genome accession: NC_010501 Putative virulence/resistance : Unknown Product : integrase family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 4790924 - 4792132 bp Length : 1209 bp Strand : + Note : PFAM: integrase family protein; KEGG: pst:PSPTO_5344 site-specific recombinase, phage integrase family DNA sequence : GTGGCGCTCACCGATACCGCCATTCGCACCGCAAGACCCCGCGACAAGCTATACCGAATCGCTGACGCGCAGGGTCTCTG CCTTGAGGTGACAACAGCTGGCGGGAAGCTTTGGCGCCTTCGCTATCGCTTTGAAGGCAAAGCCAAAATGCTTGGCTTGG GCACCTACCCCTCCGTTACCCTCGCCCACGCCCGCGAACGCCGGGATGCTGCTCGAAAACTCTTGTCGCAGGGCATCGAC CCAAGCGCATATAAACAGCAGGAAAAAGCAGCCGCTGAGGCCCAGGCCCTGACGCTCGAAACGCTGGCTCGGGAGTGGTA CGACTACAACCAGCCGCGATGGGCACCGGCCACCGCGTCCAAGGCCCTGCAATATCTGGAGTCCGACATTTTCCCGCTGA TTGGCAAGCGGCCCGCCGCCGAAGTCCAGCGCCCTGAACTTGTTGACCTAGTCCGCAAGATCGAGCAGCGAGAGGCGTTT AATGTCGCCCGCAAGGTTCGCCAGTGGCTAAGCCAGATATTCCGCTTCGGTCTGGCCAAGGGCGTAGTGGCCGGCAATCC CGCCACCGATCTGGACGTGGTAGCGGCCCACGCCCCGCGCACTCGCCACCATCCGCACGTATCGGAAGCCGAATTACCGG AGCTACTGGAGAAACTTGAGGCAGCCCAATGCGACTTCACCAGCAAGATCGCCATTCGCCTGCTGCTGCTGACGGCAGTG CGACCTGGGGAGCTGCGGCTGGCACCATGGGATGAGTTCGACCTGGAGTCAGCGACCTGGACGATCCCTGCAGCCCGGAT GAAAGCGCGGCGCCCACACATAGTCCCGCTCCCGCGTCAGGCCGTGAACCTGCTGCGTGCCCTGCATGAGCTAACCGGCA CCTACCCCCTCGCCTTCCCTGGGCGTAATGATCGATCCAGACCAATGAGCGAGAACACAGTGAACAAGGCGTTGTCCACG ATGGGCTATGAGGGTCGCCAGACTGGCCACGGCTTCCGTCATCTGCTGAGCACCAGTCTAAATACTCGAGGCTACAACCG CGACTGGATCGAACGGCAACTGGCCCACGGCGATCAAGACTCGATTCGCGACACGTACAACCATGCACATTACCTGGAGC AGCGACGGGAAATGATGCAGACCTGGGCAGACCATGTTGACGCCCTAGCCGAACAAACCAGTGTCGTAAAATTCAAAGCA AGAGCCTAA Protein sequence : MALTDTAIRTARPRDKLYRIADAQGLCLEVTTAGGKLWRLRYRFEGKAKMLGLGTYPSVTLAHARERRDAARKLLSQGID PSAYKQQEKAAAEAQALTLETLAREWYDYNQPRWAPATASKALQYLESDIFPLIGKRPAAEVQRPELVDLVRKIEQREAF NVARKVRQWLSQIFRFGLAKGVVAGNPATDLDVVAAHAPRTRHHPHVSEAELPELLEKLEAAQCDFTSKIAIRLLLLTAV RPGELRLAPWDEFDLESATWTIPAARMKARRPHIVPLPRQAVNLLRALHELTGTYPLAFPGRNDRSRPMSENTVNKALST MGYEGRQTGHGFRHLLSTSLNTRGYNRDWIERQLAHGDQDSIRDTYNHAHYLEQRREMMQTWADHVDALAEQTSVVKFKA RA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 8e-79 | 46 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 4e-77 | 45 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 4e-77 | 45 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 2e-77 | 45 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 2e-76 | 44 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 2e-76 | 44 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 2e-76 | 44 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 2e-76 | 44 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 2e-75 | 44 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 2e-75 | 44 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 1e-75 | 44 |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 4e-76 | 43 |
| int | AAN62223.1 | putative integrase | Not tested | PAGI-3(SG) | Protein | 2e-58 | 43 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 1e-59 | 42 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 1e-59 | 42 |
| unnamed | AAT96071.1 | site-specific recombinase | Not tested | T-PAI | Protein | 6e-49 | 42 |
| ECO111_3718 | YP_003236059.1 | putative integrase | Not tested | LEE | Protein | 2e-58 | 41 |
| ORF_1 | AAZ04412.1 | phage integrase | Not tested | PAI I APEC-O1 | Protein | 4e-60 | 41 |
| APECO1_3534 | YP_854214.1 | P4-like integrase | Not tested | PAI I APEC-O1 | Protein | 5e-60 | 41 |
| c5216 | NP_757064.1 | prophage P4 integrase | Not tested | PAI II CFT073 | Protein | 4e-60 | 41 |
| int | AAT48697.1 | CP4-like integrase | Not tested | PAI I 4787 | Protein | 1e-59 | 41 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 5e-60 | 41 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 5e-60 | 41 |
| intP4 | CAE85151.1 | CP4 integrase protein | Not tested | PAI V 536 | Protein | 4e-60 | 41 |
| int | AAL51003.1 | CP4-like integrase | Not tested | LEE | Protein | 1e-59 | 41 |
| int | NP_458759.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 7e-57 | 41 |
| int | NP_807963.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 7e-57 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PputW619_4347 | YP_001751196.1 | integrase family protein | VFG0783 | Protein | 1e-76 | 44 |
| PputW619_4347 | YP_001751196.1 | integrase family protein | VFG0598 | Protein | 7e-76 | 44 |
