Gene Information

Name : PputW619_0037 (PputW619_0037)
Accession : YP_001746912.1
Strain : Pseudomonas putida W619
Genome accession: NC_010501
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 40313 - 41848 bp
Length : 1536 bp
Strand : -
Note : PFAM: transposase IS66; KEGG: pau:PA14_59580 putative transposase

DNA sequence :
ATGACTTTCTCGCCCAACCTCGACCAGATGACCCCGGAACAGCTTCGTGCCTTGGCGGCACAGGCGTTGCAATTGCAATC
CCAGGTCGAGGCGATGAGCAGGAAGATTCAGAACGATGAAATCCTCATCGAACAGTTCAAGTTCGAAATCGCCCTGCTCA
AACGGCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCCGGCGCAAAGCAGCTTGCTGGATGACCTGCTCGACACAGAC
CTTGAAGCTATCGAGGCCGAGCTAAAACAGCTTCTCCCAGATGCGCCACAGGCCGAACCACGACAATCCCCGAAACGTGC
GCCTTTGCCGCCGCAGTTTCCACGCACGGTGATTCGTCACGAACCCGAAAACACCCAGTGCGTCTGTGGCTGCCAACTTC
AACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCGGGCGTGTTTACCGTCGAGCAACATGTGCGGGGCAAA
TGGGCCTGTCGCCAGTGCGAAACCCTGATCCAGGCCCCGGTGCCAGCCCAGGTTATCGACAAAGGTATCCCGACCACAGG
TTTGTTGGCCCACGTGATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACCGGCAGGAGAAAATCTTTGGCCGTGCCG
GGCTGGCAATTGCTCGCTCGACCCTGGCGCAGTGGGTCGGACAAACCGGCGTGCGGCTTCAGCCACTGGTCGATGCACTG
CGTGAAGCCGTGCTGAACCAGGGCGTGATCCACGCTGATGAGACACCGGTGCAAATGCTTGCGCCAGGCGAGAAGAAAAC
CCACCGGGCCTATGTCTGGGCGTACAGCACGACGCCGTTTTCAGGGCTCAACGCGGTGGTTTACGACTTCAGCCCAAGCC
GTGCTGGCGAACATGCGCGCAACTTCCTGGGTGACTGGAACGGCAAGTTGGTCTGCGACGACTTCGCTGGCTACAAAGCC
GGTTTCGAACAAGGCATCACTGAAATCGGCTGCATGGCCCACGCCCGGCGCAAGTTCTTTGATTTGCACGTGGCGAACAA
AAGTCAGCTGGCTGAACAGGCCCTGCACTCGATCAGCGGCTTGTACGAGGTCGAACGTCAGGCGCGGGACATGAGTGATG
AAGAGCGCTGGCGAATACGACAAGAATTGGCGGTGCCGATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGAC
TTGGTGCCCAACGGATCAGCCACGGCCAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACCCGCTACCTGGA
TGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTTAT
TTGCGGGATCCCTGCGCAGCGGTAAGCGGGCTGCGGCAATCATGAGTTTGATCCAGTCGGCGCGCATGAATGGGCATGAT
CCGTATGCCTATCTCAAAGATGTGCTGACGCGGCTGCCGACCCAACGGGCCAGTGAGATCGGACAGTTGCTGCCGCATCA
GTGGGTGCCGGCCTGA

Protein sequence :
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSRKIQNDEILIEQFKFEIALLKRHKFAKRSEQISPAQSSLLDDLLDTD
LEAIEAELKQLLPDAPQAEPRQSPKRAPLPPQFPRTVIRHEPENTQCVCGCQLQRIGEDVSEKLDYTPGVFTVEQHVRGK
WACRQCETLIQAPVPAQVIDKGIPTTGLLAHVMVAKFADHLPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDAL
REAVLNQGVIHADETPVQMLAPGEKKTHRAYVWAYSTTPFSGLNAVVYDFSPSRAGEHARNFLGDWNGKLVCDDFAGYKA
GFEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSISGLYEVERQARDMSDEERWRIRQELAVPILKTLHDWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGAVPIDNNQVENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARMNGHD
PYAYLKDVLTRLPTQRASEIGQLLPHQWVPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 0.0 95
tnpC AEZ06051.1 transposase Not tested Tn6167 Protein 1e-136 55
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 5e-65 43
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 5e-72 42
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 1e-66 41
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 3e-69 41
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 9e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputW619_0037 YP_001746912.1 transposase IS66 VFG1700 Protein 2e-65 43
PputW619_0037 YP_001746912.1 transposase IS66 VFG1513 Protein 6e-67 41