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Name : PputW619_3465 (PputW619_3465) Accession : YP_001750317.1 Strain : Pseudomonas putida W619 Genome accession: NC_010501 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 3813839 - 3816088 bp Length : 2250 bp Strand : - Note : PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pen:PSEEN3557 arginine/lysine/ornithine decarboxylase DNA sequence : ATGTACAAGGACCTCAAGTTCCCCATCCTCATTGTCCACCGCGCCATAAAGGCCGACAGCGTTGCCGGCGAGCGTGTGCG GGGGATTGCCGAGGAACTGCGTCAGGACGGCTTCGCCATTCTCGCCGCCGCAGACAATGCTGAAGCCCGTCTGGTCGCTG CCACCCATCACGGGCTGGCCTGCATGCTGATCGCCGCCGAAGGCGTCGGCGAAAACACTCACTTGTTGCAGAACATGGCC GAGCTGGTACGCCTGGCCCGCCAGCGTGCCCCGAACCTGCCAATATTCGCCCTGGGCGAACAGGTCACCCTGGAAAACGC CCCTGCTGAAGCGATGAGCGAGCTCAACCAGCTGCGCGGCATCCTTTACCTGTTCGAGGATACCGTGCCGTTCCTCGCCC GCCAGGTAGCACGTGCCGCACACAACTACCTCGACGGCTTGCTGCCGCCTTTCTTCAAGGCCTTGGTACAACACACCGCG CAGTCCAATTATTCCTGGCACACGCCCGGCCATGGCGGTGGCGTGGCTTACCGCAAAAGCCCGGTGGGCCAAGCCTTCCA TCAATTCTTCGGCGAGAATACCTTGCGCTCGGACTTGTCCGTCTCGGTGCCGGAACTGGGCTCGCTGCTCGATCACACTG GCCCTTTGGCAGCGGCCGAAGCCAGGGCGGCGCGCAACTTTGGTGCCGACCATACCTTCTTCGTGATCAATGGCACCTCC ACCGCCAACAAGATCGTCTGGCATGCCATGGTCGGCCGTGATGACCTGGTGCTGGTGGACCGTAACTGCCACAAGTCGGT GGTCCATGCCATCATCATGACCGGCGCCATTCCCATCTACCTATGCCCGGAGCGCAACGAGCTGGGCATCATCGGGCCGA TCCCGCTCAGCGAATTCAGCGCCGAATCGATCCAGGCCAAGGTGCGGGCCAACCCCTTGGCCAAAGGGCGCGAACCGCGC ATCAAGCTGGCGGTGGTGACCAATTCAACCTATGACGGGCTGTGTTATCACGCCGGGCTGATCAAGCAAGCTCTGGGCAG CAGCGCCGAGGTGCTGCACTTCGATGAAGCCTGGTTCGCTTACGCGGCGTTTCATGAGTTCTTCACGGGGCGCTATGCGA TGGGTACGGCCTGCACCGAGGACAGCCCGTTGGTGTTCAGCACGCACTCTACGCACAAGCTGCTGGCTGCCTTCAGCCAG GCGTCGATGATTCATGTGCAGGACGGCGCCCAGCGGCAACTGGACCGTGGTCGCTTCAATGAAGCCTTCATGATGCATAT TTCCACCTCGCCGCAGTACAGCATCCTCGCTTCTTTGGATGTGGCTTCGACCATGATGGAGGGCCACGCAGGGCGCTCGC TGCTGCAAGAGATGTTTGACGAGGCACTGAGCTTTCGTCGCGCCCTGGCCAACCTGCGTGCACATATCGCTGCCACTGAT TGGTGGTTCAGTATCTGGCAGCCGCCGGGGGCAGAAGGCATCGATCAGCTCGCCGCGCAGGACTGGCTGCTCCAACCTGG GGCGCAGTGGCATGGCTTTGGCGAATTGGCGGGCGATTATGTGCTGCTTGACCCGCTCAAGGTCACCTTGGTGATGCCGG GGTTGCGGGCCGACGGGGTGTTGGACGAGCAGGGCATTCCCGCGGCAGTGGTCAGCAAGTTTCTCTGGGAGCGCGGGTTG GTGGTGGAGAAAACCGGCCTTTATAGCTTCCTGGTGCTGTTCTCGATGGGCATTACCAAGGGCAAGTGGAGTACGCTGCT GACCGAGTTGCTGGAGTTCAAACGCCATTATGATGGCAATACTCCGTTAAGCCAGTGCCTGCCGAGCATCGTTGCGGTCG ACACGGCACGCTACCACGGTATTGGATTGCGCGACCTGTGCAACCAGTTGCATCAACGCTATCGCGTCAATGCCACGGCC AAGCAACTCAAAGGGTTGTTCAGTCGCTTGCCGGAAGTGGCGCTCAGCCCGGCCCGGGCCTATGACCATATGGTGCGCGG TGAGGTGGAAGCGGTGCCGATCGAGGCATTGCTCGGCCGCGTCGCGGCAGTCATGCTGGTGCCATACCCGCCCGGCATAC CTTTGATCATGCCGGGGGAGCGGTTCACTGAAGCAACCCGCTCGATCCTCGACTACCTGGTGTTTGCCCGCGCCTTCAAC AGCGGTTTTCCCGGTTTCGTCGCCGATGTGCACGGCCTGCAGAACGAAAGCGGAAACTATACGGTCGATTGCGTCAAGGA ATACGAATGA Protein sequence : MYKDLKFPILIVHRAIKADSVAGERVRGIAEELRQDGFAILAAADNAEARLVAATHHGLACMLIAAEGVGENTHLLQNMA ELVRLARQRAPNLPIFALGEQVTLENAPAEAMSELNQLRGILYLFEDTVPFLARQVARAAHNYLDGLLPPFFKALVQHTA QSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAAAEARAARNFGADHTFFVINGTS TANKIVWHAMVGRDDLVLVDRNCHKSVVHAIIMTGAIPIYLCPERNELGIIGPIPLSEFSAESIQAKVRANPLAKGREPR IKLAVVTNSTYDGLCYHAGLIKQALGSSAEVLHFDEAWFAYAAFHEFFTGRYAMGTACTEDSPLVFSTHSTHKLLAAFSQ ASMIHVQDGAQRQLDRGRFNEAFMMHISTSPQYSILASLDVASTMMEGHAGRSLLQEMFDEALSFRRALANLRAHIAATD WWFSIWQPPGAEGIDQLAAQDWLLQPGAQWHGFGELAGDYVLLDPLKVTLVMPGLRADGVLDEQGIPAAVVSKFLWERGL VVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRHYDGNTPLSQCLPSIVAVDTARYHGIGLRDLCNQLHQRYRVNATA KQLKGLFSRLPEVALSPARAYDHMVRGEVEAVPIEALLGRVAAVMLVPYPPGIPLIMPGERFTEATRSILDYLVFARAFN SGFPGFVADVHGLQNESGNYTVDCVKEYE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 9e-125 | 43 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 3e-120 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PputW619_3465 | YP_001750317.1 | lysine decarboxylase | VFG1670 | Protein | 5e-125 | 43 |
