Gene Information

Name : PputW619_3423 (PputW619_3423)
Accession : YP_001750276.1
Strain : Pseudomonas putida W619
Genome accession: NC_010501
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0550
EC number : -
Position : 3767298 - 3769262 bp
Length : 1965 bp
Strand : +
Note : decatenates replicating daughter chromosomes

DNA sequence :
ATGCGCCTGTTCCTCTGCGAAAAACCCTCCCAGGCAAAAGACATCGCCAAGATCCTTGGCGCCAACCGCAAGGGCGACGG
CTGCTGGCAAGGCACCGACGTCTGCGTCACCTGGTGCATAGGCCACCTGTTGGAAACCGCTCCGCCTGACAGCTACGACG
AACGTTACAAGCGCTGGAACCTCGCCGACCTGCCGATCATTCCGGAAAAGTGGAAGATGCTGGTCAAACCCAAGACTGCC
AGCCAGTTCAAGGCCGTCAAGCGCCTGCTCGGCGAAGCACGAGAACTGGTAATCGCCACCGATGCCGACCGCGAAGGCGA
AATGATCGCCCGCGAGCTGGTCGAACATTGTCGCTACCGTGGGCCCATTCAGCGCCTGTGGCTGTCCGCACTGGACGATG
CCTCGATTCGCAAGGCCCTTGCGCGTCTGTTGCCGGGGCAGGACACCTTCAACCTCTATCACTCGGCGCTCGGCCGCTCA
CGCGCCGACTGGCTCATAGGCATGAACATGAGCAGGCTTTTCACCCTGTTGGGCCGCCAGTCCGGCTATCAGGGTGTGCT
ACCGGTGGGCCGGGTACAAACACCCACCCTGCGCCTGGTGGTGGACCGCGACCGCAGCATCGCTGATTTCGTACCGGTAC
CGTTCTGGGCCATCGAGGTGCAACTCGAGCATGCCGGCCTGGTCTTCAATGCACAATGGCGGGCCCCGGAGGGCATCTGT
GACGACCAGGGCCGCTGCCTTAACCAGGCGCTGGCCCAACAGGCCGCCACAGACATCGGGAACGCCCGCTCCGCACGGGT
GCTCAAGGTGACCACCGAACGCGTACGCGAGGCAGCACCCCTGCCCTTCGACCTCGGCACCCTGCAGGAATTGTGCTCAA
AGAAATTCGGCCTTGGCGCCCAGGAAACCCTCGACATTGCCCAGGCCCTGTACGAAACCCACAAGCTGATCACTTACCCA
CGGAGCGACTGCGGCTACCTGCCCGTCAGCCAGCACAGCGAAGCGCCGGCAATCCTCACTGCATTGCAGCGCGTCGATAG
CAGCCTGGCGCCGTTGCAAGCGCACCTTGAGCCGCAGCGCCGCTCGCGGGCCTGGAACGATGCCAAAGTTACCGCGCACC
ACGGCATCATCCCTACCGCGGCCGCCAGCGACCCGTCGCGCTTGCCTGCCAAGCACAAGGCGGTCTATACCCTGATCCGT
GCCCGTTACCTGGCCCAGTTCCTGCCCAACCACGAGTACGATCGAACCCAGGCCGAGTTCGACTGTGCAGGCCATGCCCT
GCGCGCCGTGGGCAAGCAGATCGTGGAGCCGGGCTGGCGTCGCGCATTACCCGAAGCGCTGGCCCCGGCCAAGGGTCGCG
AAGCCCCGCCGGCGCAGGTCCTGCCAACATTGTGTGAAAGTCAGGACTGCTCCGTACAGGGCCTGCAGTTGAAGGACCTC
TGGACCCAACCGCCCAAACCCTTCACCGAAGGCGACCTGATCAAAGCCATGAAGAACGTCGCCAAGCTGGTGGACGACCC
GCGGCTGAAACAGAAGCTCAAGGAAACCACCGGCATCGGTACTGAGGCGACCCGTGCCAGCATCATCCAGGGCCTGCTCG
ACCGGGGCTATCTGGTCAAGAACGGCAAGGCACTGGCGGCCACCCCAGCCGCATTCAGCCTGATCGACGCCGTGCCACGC
GCCATCGCCGACCCAGGTACCACGGCAATCTGGGAGCAGGCGCTGGACATGGTGCAAAGTGGTGAAATGAGCCTGGAGGA
CTTCGTTGCGCGGCAGTCGGCATGGATGGGTAAGCTGGTGGAGCGCTGCAGCGGCATGCGCATGACCATAAACGGGCCAG
CGGTGGGCAAGGCGGCGCCGTGGAAGAAAAAGCGCAGGAACGGGGGCAAAGGCAAGCTTGCAGCGAGCGGTGCCAAGACC
ACGGCCAGCAAGCCGCGACAGCCTCGGCGCAAGGCCCCCAACTGA

Protein sequence :
MRLFLCEKPSQAKDIAKILGANRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWNLADLPIIPEKWKMLVKPKTA
SQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYRGPIQRLWLSALDDASIRKALARLLPGQDTFNLYHSALGRS
RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIEVQLEHAGLVFNAQWRAPEGIC
DDQGRCLNQALAQQAATDIGNARSARVLKVTTERVREAAPLPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYP
RSDCGYLPVSQHSEAPAILTALQRVDSSLAPLQAHLEPQRRSRAWNDAKVTAHHGIIPTAAASDPSRLPAKHKAVYTLIR
ARYLAQFLPNHEYDRTQAEFDCAGHALRAVGKQIVEPGWRRALPEALAPAKGREAPPAQVLPTLCESQDCSVQGLQLKDL
WTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALAATPAAFSLIDAVPR
AIADPGTTAIWEQALDMVQSGEMSLEDFVARQSAWMGKLVERCSGMRMTINGPAVGKAAPWKKKRRNGGKGKLAASGAKT
TASKPRQPRRKAPN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 0.0 64
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 0.0 63
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 0.0 63
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 5e-153 50
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 5e-153 50
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 3e-153 50
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 2e-149 50
PMI2630 YP_002152332.1 DNA topoisomerase III Not tested Not named Protein 1e-151 50
topB AAW83109.1 TopB Not tested GGI Protein 2e-119 43