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Name : PputW619_0299 (PputW619_0299) Accession : YP_001747174.1 Strain : Pseudomonas putida W619 Genome accession: NC_010501 Putative virulence/resistance : Virulence Product : putative sigma-54 specific transcriptional regulator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 313921 - 314751 bp Length : 831 bp Strand : + Note : PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN5263 sigma-54 dependent transcriptional regulator DNA sequence : ATGACGCTTCAACACCCGTTTGGCCAGCCACTGCTGACCTTCCCCGAGCTGGACAAAAGCCCGCTGAGCATCCGTGCCAA GGCCTTGGTGTTCATCGACCCGCGTTCACAGCAGTTACGCGAAGACCTTGAGCGTCTGGCACCGCAACCCTTGCCGGTGC TGATCCGTGGCGAAACCGGCACGGGCAAGGAACTGCTGGCCCGGCAGATCCATCGTGCCAGCGACCGTGGAGGGCTATTC GTGTCGGTCAACTGTGCGGCTATCAGCCCCACTTACGCCGATGCCGAGCTGTTCGGCTATAGCGCTGGCAGCCATGGCGG TACGGCCAGCAGCCGCGCCGGCTGGTTCGGTTCGGCCAACGGCGGCACGCTGTACCTGGACGAGATTGCCGACTTGCCGC TGGCTATCCAGGGTAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACCCGGGTGGGCGCGCAGCAGCCACAGCCGGTG GACGTGCGCCTGGTGGCTGCGACCAGTATTGACCTGGCCCGGGTGGTTAAAGCTGGCAGGTTCAATGAACGCTTGTACCA GTACTTGCACGAAGGTGCGCTGGAGCTGCCTCCGTTGCGTGAGCGCTGCGGCGATATCCTGCCGTTGGCTGAGTATTTCG TGGGCATCTACTGCGCACGCCTGCAGCGCCCTGTGCCGTTGATCAGCGAAGCGGCCCAGCAGGTGCTCGAAGCCCACACG TGGCCCGGCAATACCCGCGAACTGGAGAACATCATCCACTTCGCCCTGCTGGTGAATGACAGTGAAGAGATCCAGCCAGA GGACCTCGACCTGCCGAATACCCCGCGCTAG Protein sequence : MTLQHPFGQPLLTFPELDKSPLSIRAKALVFIDPRSQQLREDLERLAPQPLPVLIRGETGTGKELLARQIHRASDRGGLF VSVNCAAISPTYADAELFGYSAGSHGGTASSRAGWFGSANGGTLYLDEIADLPLAIQGKLLAALENREVTRVGAQQPQPV DVRLVAATSIDLARVVKAGRFNERLYQYLHEGALELPPLRERCGDILPLAEYFVGIYCARLQRPVPLISEAAQQVLEAHT WPGNTRELENIIHFALLVNDSEEIQPEDLDLPNTPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 3e-37 | 44 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 3e-37 | 44 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 1e-38 | 43 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 1e-38 | 43 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 6e-33 | 43 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 6e-33 | 43 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 4e-35 | 41 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 9e-36 | 41 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 1e-35 | 41 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 1e-36 | 41 |
