|
Name : PputW619_1414 (PputW619_1414) Accession : YP_001748288.1 Strain : Pseudomonas putida W619 Genome accession: NC_010501 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1554995 - 1557004 bp Length : 2010 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: pen:PSEEN1506 dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase WbpM DNA sequence : ATGAGTGACGCGAACAAAGACAGGGTGCGCCAGTACCTGGTGAACCTGTCCCGGCGTCAGAAGCGCCTGATACAGGTGTG CACCGACGTCGTGCTTATCTGGTTTGCACTGTGGCTGTCGTTCATCGTGCGCCTGGGCATCGATGAAATGTACAACCCCA TCATCGAACACACCTGGCTGTTCCTGGCTGCGCCGGTCGTGGCCATTCCGCTGTTCATCCGCTTTGGCATGTACCGCGCG GTGATGCGCTACTTCGGCAATGACGCGCTGGTTGCCATCATCAAGGCGGTCACCTTGTCCTCCTTGATACTGGCTGTGGT GGTCTATTGGTACAGCAACCATCAGGTCATCGTGCCGCGTTCGATCATTTTCAATTACTGGTGGCTGAGCCTGGTCATCA TGGGCGGCTTGCGCCTGATCATGCGCCAGTATTTTCTGGGCGACTGGTTCAGCGGTGCTCATCAAATCCCTTTTACCAAC CGCGATGATGGCCAGGTCAAAGTTGCCATTTACGGCGCAGGCACGGCCGGCAACCAGTTGCTGGCGGCATTGCGCATGGG GCGTGTGATGCGCCCCGTGGCCTTCATTGACGATGACGGCGACCTGGCCAACCGGGTCATTTCCGGCCTGCAGGTGTACA AGCCCAAGCACCTTGAACAGATGATCAAAGAAACCGGCGCCCAGGAAATCCTCCTGGCGCTGCCAACCGCTTCACGTGCG CGGCGCAAAGAGATCCTTGCCTTCCTCGAACCGTACCCGTTGCATGTGCGCAGTGTGCCGGCGTTTGCCGACCTGGCCAG TGGCCGGGTAAAGGTCGATGACATCCAGGATGTCGACATTGCCGACTTGCTGGGCCGCGACCCGGTGCCGGCGCAGGATG AACTGCTTTGGCGCTGCAACAAGAAGCGTACCGTGCTGGTGACCGGCGCGGGCGGCTCGATCGGCTCCGAGCTGTGCCGG CAGATCATCGGGCTGGAGCCCAAGACCCTGCTGCTGTTCGACCACAGTGAATTCAACCTGTACAGCATCCTCACCGAGCT TGAGCAGCGCATTACGCGCGAGTCGCTGGCGGTGCAGTTGTTGCCGATTCTGGGTTCGGTGCGTAACCAGCAGCACCTGG CCGATGTGATGAGCACCTGGCGGGTGGACACCGTGTATCACGCGGCGGCCTACAAGCACGTGCCAATGGTCGAGCACAAC GTGGCCGAAGGCATCCTCAACAATGTGTTCGGCACGCTGTGCACGGCGCAGGCCGCGCTGCAGACGGGGGTGGCCAACTT TGTGCTGATCTCCACCGACAAGGCCGTACGCCCGACCAACGTGATGGGCAGCTCCAAGCGGTTGTCCGAGTTGATCCTGC AGGCGCTGAGCCGCGAAGCGGCGCCGGTGATGTATGGCGACAGCAGCAAGATTTCCCGGGTGAATAAAACCCGCTTCACC ATGGTGCGCTTTGGCAATGTGCTGGGCTCTTCCGGTTCTGTGATTCCGTTGTTCCATCAGCAGATCAAAGCCGGTGGCCC GCTGACGGTGACCCACCCCAAGATCACCCGCTATTTCATGACCATCCCCGAGGCTGCGCAGCTGGTGGTGCAGGCGGGGG CCATGGGGCAGGGCGGCGATGTGTTCGTGCTGGACATGGGCGAGCCGGTAAAAATCGTCGAGCTGGCAGAAAAGATGGTC CACCTGTCGGGCTTCAGTGTGCGCAGCCCGGATAACCCGCACGGTGACATTGCCATCGAGTTCAGCGGGCTACGGCCCGG CGAGAAGCTTTATGAAGAGTTGCTGATTGGCGATGACGTCTCCCCAACGGCGCACCCGATGATCATGGCGGCCAACGAAG ACTTCATCGCCTGGGACGTATTGCGCGAGCGCTTGGCCATGCTGTTCAAGGCCGTGGCCGAAGATGACTTCACCCGCGTG CGGCAACTGCTGCGCGAACTGGTCAGCGGCTACTCGCCAGAGGGTGACATTGTCGACTGGGTTTACCAGCAGCAGCGTCG GGACCGCTAG Protein sequence : MSDANKDRVRQYLVNLSRRQKRLIQVCTDVVLIWFALWLSFIVRLGIDEMYNPIIEHTWLFLAAPVVAIPLFIRFGMYRA VMRYFGNDALVAIIKAVTLSSLILAVVVYWYSNHQVIVPRSIIFNYWWLSLVIMGGLRLIMRQYFLGDWFSGAHQIPFTN RDDGQVKVAIYGAGTAGNQLLAALRMGRVMRPVAFIDDDGDLANRVISGLQVYKPKHLEQMIKETGAQEILLALPTASRA RRKEILAFLEPYPLHVRSVPAFADLASGRVKVDDIQDVDIADLLGRDPVPAQDELLWRCNKKRTVLVTGAGGSIGSELCR QIIGLEPKTLLLFDHSEFNLYSILTELEQRITRESLAVQLLPILGSVRNQQHLADVMSTWRVDTVYHAAAYKHVPMVEHN VAEGILNNVFGTLCTAQAALQTGVANFVLISTDKAVRPTNVMGSSKRLSELILQALSREAAPVMYGDSSKISRVNKTRFT MVRFGNVLGSSGSVIPLFHQQIKAGGPLTVTHPKITRYFMTIPEAAQLVVQAGAMGQGGDVFVLDMGEPVKIVELAEKMV HLSGFSVRSPDNPHGDIAIEFSGLRPGEKLYEELLIGDDVSPTAHPMIMAANEDFIAWDVLRERLAMLFKAVAEDDFTRV RQLLRELVSGYSPEGDIVDWVYQQQRRDR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-80 | 43 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-80 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PputW619_1414 | YP_001748288.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 1e-126 | 47 |
