Gene Information

Name : EcSMS35_4791 (EcSMS35_4791)
Accession : YP_001746705.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Unknown
Product : IS1203 transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4882937 - 4883827 bp
Length : 891 bp
Strand : +
Note : identified by match to protein family HMM PF00665

DNA sequence :
ATGATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGCTATGCAGCGAACTGCATATTGCCCCGTCAAC
GTATTACCACTGTCAGCAACAGCGACATCATCCGGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAG
AGATACAGCGCGTATACGATGAAAATCATCAGGTGTACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATC
AGAGTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTAC
GACCATCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGG
TGGCTGATTTTACTTACGTCAGCACATGGCGGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATC
GTGGGGTGGCGGGTCTCATCGTCTATGGAAACGACATTCGTGCTGGATGCTCTGGAGCAGGCGTTATGGGCCCGTCAACC
GTCCGGCACAGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGAT
TACTGGCATCAACAGGAAGTACTGGTGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGCCTTTACAAAGCGGAG
GTAATACACCGTAAGAGCTGGAAAAACCGGACAGAAGTGGAGCTGGCCACACTCACGTGGGTGGACTGGTATAACAATCG
ACGATTGCTGGAAAGGCTGGGCCATATCCCACCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATC
TGGCAGCCTGA

Protein sequence :
MMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHQVYGVRKVWRQLLREGI
RVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYI
VGWRVSSSMETTFVLDALEQALWARQPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAE
VIHRKSWKNRTEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-134 99
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-135 99
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-93 99
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-108 99
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-101 99
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 9e-135 97
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-92 97
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-134 97
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-134 97
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-130 96
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-130 96
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 4e-129 96
Z1221 NP_286756.1 transposase Not tested TAI Protein 6e-131 96
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-130 96
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-130 96
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-130 96
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-132 95
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-130 95
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-130 95
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-132 95
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 6e-129 93
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-52 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcSMS35_4791 YP_001746705.1 IS1203 transposase orfB VFG1602 Protein 3e-129 93