Gene Information

Name : EcSMS35_4772 (EcSMS35_4772)
Accession : YP_001746691.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Unknown
Product : IS1203 transposase orfA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 4870757 - 4871098 bp
Length : 342 bp
Strand : -
Note : identified by match to protein family HMM PF01527

DNA sequence :
ATGACTAAAAATACTCGTTTTTCCCCCGAAGTCCGTCAGCGGGCGATTCGTATGGTTCTGGAAAGTCAGGATGAATATGA
CTCACAGTGGGCGGCAATTTGTTCCATTGCTCCAAAGATTGGCTGTACGCCGGAGACTCTGCGTGTCTGGGTTCGCCAGC
ATGAGCGGGATACCGGGGGCGGTGATGGTGGGCTCACCAGCGCTGAACGTCAGCGTCTGAAAGAGCTGGAACGTGAAAAT
CGTGAACTGCGCCGCAGTAACGATATCCTTCGCCAGGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCCTCTGGAA
AAATGATGCCACTGCTGGATAA

Protein sequence :
MTKNTRFSPEVRQRAIRMVLESQDEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTSAERQRLKELEREN
RELRRSNDILRQASAYFAKAEFDRLWKNDATAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3720 YP_003236060.1 putative IS629 transposase OrfA Not tested LEE Protein 3e-32 99
ECO111_3775 YP_003236110.1 putative IS629 transposase OrfA Not tested LEE Protein 3e-32 99
Z4335 NP_289560.1 hypothetical protein Not tested OI-122 Protein 3e-32 99
IS629 CAI43908.1 hypothetical protein 1 Not tested LEE Protein 1e-35 98
ECO103_3584 YP_003223442.1 IS629 transposase OrfA Not tested LEE Protein 1e-35 98
IS629 CAC37925.1 hypothetical protein Not tested LEE Protein 1e-35 98
IS629 CAI43820.1 hypothetical protein Not tested LEE Protein 1e-35 98
IS629 CAI43841.1 hypothetical protein Not tested LEE Protein 1e-35 98
Z1199 NP_286734.1 hypothetical protein Not tested TAI Protein 5e-35 96
c5168 NP_757016.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-29 96
unnamed AAF09023.1 unknown Not tested SHI-O Protein 2e-29 96
Z1222 NP_286757.1 hypothetical protein Not tested TAI Protein 5e-35 96
c5214 NP_757062.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-29 96
tnpE AAD44738.1 TnpE Not tested SHI-2 Protein 2e-29 96
Z1639 NP_287142.1 hypothetical protein Not tested TAI Protein 5e-35 96
S3184 NP_838467.1 IS629 orfA Not tested SHI-1 Protein 2e-29 96
unnamed AAL67399.1 TnpE-like protein Not tested PAI II CFT073 Protein 2e-29 96
Z1661 NP_287163.1 hypothetical protein Not tested TAI Protein 5e-35 96
SF2979 NP_708753.1 IS629 ORF1 Not tested SHI-1 Protein 2e-29 96
unnamed ADD91740.1 hypothetical protein Not tested PAI-I AL862 Protein 2e-29 96
unnamed AAL67404.1 R13-like protein Not tested PAI II CFT073 Protein 1e-28 95
SF3706 NP_709445.1 IS629 ORF1 Not tested SHI-2 Protein 2e-29 95
c3596 NP_755471.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-28 95
c5177 NP_757025.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-28 95
ECUMN_3344 YP_002414020.1 transposase ORF A, IS629 Not tested Not named Protein 1e-28 95
r13 AAC61722.1 R13 Not tested PAI I CFT073 Protein 1e-28 95
S4062 NP_839231.1 IS629 orfA Not tested SHI-2 Protein 1e-28 95
unnamed CAD42084.1 hypothetical protein Not tested PAI II 536 Protein 6e-28 93
APECO1_3498 YP_854313.1 transposase; OrfA protein of insertion sequence IS629 Not tested PAI I APEC-O1 Protein 8e-27 91
ORF_36 AAZ04445.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 5e-27 91

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcSMS35_4772 YP_001746691.1 IS1203 transposase orfA VFG0643 Protein 7e-30 96
EcSMS35_4772 YP_001746691.1 IS1203 transposase orfA VFG1717 Protein 4e-29 95
EcSMS35_4772 YP_001746691.1 IS1203 transposase orfA VFG0606 Protein 5e-30 95
EcSMS35_4772 YP_001746691.1 IS1203 transposase orfA VFG1603 Protein 2e-28 93