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Name : EcSMS35_4753 (EcSMS35_4753) Accession : YP_001746674.1 Strain : Escherichia coli SMS-3-5 Genome accession: NC_010498 Putative virulence/resistance : Unknown Product : phage integrase family site specific recombinase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 4851586 - 4852851 bp Length : 1266 bp Strand : + Note : identified by match to protein family HMM PF00589 DNA sequence : ATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGCAATATAAGCTGACTGATGGTGGCGGTATGCA TCTGCTTGTCCATCCAAATGGTTCTAAGTACTGGCGTTTGCAGTACCGTTATGAGGGAAAGCAAAAAATGCTGGCACTTG GGGTTTATCCTGAAATCACACTAGCGGATGCCAGAGTACGTCGTGACGAGGCGCGTAAGCTGCTTGCGAATGGCGTCGAT CCGGGAGACAAAAAGAAAAATGATAAGGTTGAACAGAGTAAAGCACGAACCTTTAAAGAAGTCGCGATTGAGTGGCATGG CACCAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTGGAAGATAATCTTTTTGCAGCGCTTGGTG AACGTAATATCGCTGAGTTAAAAACTCGAGATTTATTAGCACCCATTAAGGCCGTAGAAATGTCTGGACGTCTTGAAGTG GCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATGCGCTATGCAGTGCAAAGTGGGTTAATTGATTATAACCCGGCACA AGAGATGGCTGGGGCGGTTGCTTCCTGTAATCGACAACATCGTCCCGCGCTTGAATTAAAGCGCATCCCTGAGTTGCTTA CAAAAATAGATAGCTATACTGGTAGGCCGCTAACCCGATGGGCGACAGAACTCTCTTTGCTGATCTTTATTCGGTCCAGT GAGCTGCGTTTTGCTCGTTGGTCAGAGATCGATTTCGAAGCGTCTATATGGACTATCCCACCGGAGCGGGAGCCTATTCC TGGAGTGAAACATTCCCATAGAGGCTCAAAAATGCGTACAACGCATCTAGTGCCTCTTTCAACGCAAGCTCTTGCAATTT TAAAGCAGATAAAACAGTTTTGTGGGGCCCATGACTTGATATTTATTGGTGATCACGATTCGCACAAACCCATGAGTGAG AATACGGTAAATAGTGCGTTACGGGTCATGGGGTATGATACAAAAGTAGAGGTTTGTGGTCATGGCTTTCGAACAATGGC CTGTAGTTCATTGGTCGAATCAGGTTTGTGGTCTCGTGATGCTGTTGAACGTCAGATGAGCCACATGGAGCGAAATTCAG TGAGGGCCGCGTATATCCATAAAGCAGAGCATCTGGAAGAACGCCGCTTGATGCTACAATGGTGGGCCGATTTTCTGGAT GCAAACAGAGAAAAATTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTAA Protein sequence : MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVD PGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEV AARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELSLLIFIRSS ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFCGAHDLIFIGDHDSHKPMSE NTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLD ANREKFISPFEYAKINNPLKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| intB | CAD42017.1 | bacteriophage P4 integrase | Not tested | PAI II 536 | Protein | 0.0 | 99 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 2e-149 | 69 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 2e-149 | 69 |
| ORF_1 | AAZ04412.1 | phage integrase | Not tested | PAI I APEC-O1 | Protein | 3e-147 | 69 |
| APECO1_3534 | YP_854214.1 | P4-like integrase | Not tested | PAI I APEC-O1 | Protein | 4e-147 | 69 |
| c5216 | NP_757064.1 | prophage P4 integrase | Not tested | PAI II CFT073 | Protein | 1e-147 | 69 |
| S4822 | NP_838459.1 | P4-type integrase | Not tested | SHI-1 | Protein | 1e-147 | 69 |
| SF2964 | NP_708738.1 | P4-type integrase | Not tested | SHI-1 | Protein | 1e-147 | 69 |
| intP4 | CAE85151.1 | CP4 integrase protein | Not tested | PAI V 536 | Protein | 8e-149 | 69 |
| ECO111_3718 | YP_003236059.1 | putative integrase | Not tested | LEE | Protein | 1e-147 | 68 |
| int-phe | AAL60261.1 | Int-phe | Not tested | LEE | Protein | 5e-149 | 68 |
| int | AAK00456.1 | Int | Not tested | SHI-1 | Protein | 3e-137 | 68 |
| ECO103_3550 | YP_003223418.1 | integrase | Not tested | LEE | Protein | 7e-149 | 68 |
| ECUMN_3322 | YP_002414004.1 | integrase | Not tested | Not named | Protein | 2e-145 | 68 |
| ECO26_5300 | YP_003232178.1 | integrase | Not tested | LEE | Protein | 7e-149 | 68 |
| c3556 | NP_755431.1 | prophage P4 integrase | Not tested | PAI I CFT073 | Protein | 8e-147 | 68 |
| int | AAT48697.1 | CP4-like integrase | Not tested | PAI I 4787 | Protein | 2e-148 | 68 |
| int | AAL51003.1 | CP4-like integrase | Not tested | LEE | Protein | 9e-149 | 68 |
| int-phe | AAL57571.1 | CP4-like integrase | Not tested | LEE | Protein | 5e-149 | 68 |
| int | AAL51028.1 | CP4-like integrase | Not tested | LEE | Protein | 5e-149 | 68 |
| Z4313 | NP_289539.1 | pathogenicity island integrase | Not tested | OI-122 | Protein | 3e-148 | 68 |
| int | CAC81896.1 | integrase | Not tested | LEE II | Protein | 2e-138 | 67 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 5e-130 | 60 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 5e-130 | 60 |
| STY4821 | NP_458899.1 | integrase | Not tested | SPI-10 | Protein | 4e-120 | 59 |
| APECO1_1051 | YP_853069.1 | phage integrase | Not tested | PAI IV APEC-O1 | Protein | 5e-84 | 56 |
| int | NP_458759.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 3e-117 | 56 |
| int | NP_807963.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 3e-117 | 56 |
| int | YP_002346908.1 | integrase | Not tested | HPI | Protein | 5e-115 | 55 |
| y2393 | NP_669700.1 | prophage integrase | Not tested | HPI | Protein | 5e-115 | 55 |
| int2 | NP_993013.1 | integrase | Not tested | HPI | Protein | 5e-115 | 55 |
| int | CAA08754.1 | integrase | Not tested | HPI | Protein | 1e-115 | 55 |
| int | CAA21384.1 | - | Not tested | HPI | Protein | 5e-115 | 55 |
| int | CAB59974.1 | integrase | Not tested | HPI | Protein | 2e-116 | 55 |
| intB | AAD37509.1 | P4-like integrase | Not tested | PAI IV 536 | Protein | 4e-97 | 55 |
| unnamed | AAD17660.1 | unknown | Not tested | HPI | Protein | 1e-111 | 53 |
| unnamed | ABR13507.1 | phage integrase | Not tested | PAGI-6 | Protein | 6e-105 | 53 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 4e-87 | 44 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 2e-86 | 44 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 4e-87 | 44 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 6e-86 | 43 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 5e-86 | 43 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 5e-86 | 43 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 6e-86 | 43 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 9e-79 | 43 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 6e-85 | 43 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 8e-85 | 43 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 8e-85 | 43 |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 5e-79 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| EcSMS35_4753 | YP_001746674.1 | phage integrase family site specific recombinase | VFG1536 | Protein | 0.0 | 99 |
| EcSMS35_4753 | YP_001746674.1 | phage integrase family site specific recombinase | VFG0626 | Protein | 4e-148 | 69 |
| EcSMS35_4753 | YP_001746674.1 | phage integrase family site specific recombinase | VFG1693 | Protein | 3e-147 | 68 |
| EcSMS35_4753 | YP_001746674.1 | phage integrase family site specific recombinase | VFG0783 | Protein | 3e-86 | 43 |
| EcSMS35_4753 | YP_001746674.1 | phage integrase family site specific recombinase | VFG0598 | Protein | 4e-85 | 43 |
