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Name : lpfC (EcSMS35_4094) Accession : YP_001746056.1 Strain : Escherichia coli SMS-3-5 Genome accession: NC_010498 Putative virulence/resistance : Unknown Product : long polar fimbrial operon protein LpfC Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4187436 - 4189958 bp Length : 2523 bp Strand : - Note : identified by similarity to GB:AAL18163.1; match to protein family HMM PF00577 DNA sequence : ATGATGACGACCAGAATAAAGGTTGGCCTCACGGCAGGGACGTGTCTGATTTTCTCGCAAAGCCTGATGGCCGAGGTCAG TGTATTCAATCCGGCGCTTCTGGAAATCGACCATCAATCCGGAGTCGATATTCGCCAGTTTAATCGGGCAAACCTGATGC CCCCAGGTGTTTATAGCGTTGATATTTTTATCAACGGTAAAATGTTTGAACGTCAGGATGTGACCTTTGTTCAGGATAAT CCCGATGCTGATTTACACGCCTGCTTTGTCGCTATTAAAAAAACGCTAACCACCTTTGGCGTAAAAGTTGATGCGCTGAA ATCGCTCAATGATGTAGATGAAACAGTCTGTATTGATCCTGGGCCACGCATTGAAGGCTCATCATGGCAGTTCGACAGCG ATAAACTGCAACTGAATATCTCCATTCCCCAAATCTATATGGATGCGATGGCTTATGATTACATCAGCCCCTCGCGTTGG GATGAGGGGATTAACGCGCTCACCATCAACTACGATTTTTCTGGTTCACATACTCTACGTTCGGATTATGGTTCACAAGA GACAGATACCAGTTATCTCAATCTGCGCAATGGACTGAATATTGGGCCGTGGCGATTACGCAATTACAGCACCTTAAATA CGACCGATGGCAGTGCAGAATACAACTCTATAAGCACCTGGATACAACGTGATATAGCTGCGTTAAGAAGCCAGATTATG ATAGGTGATACGTGGACGGCGAGCGATATCTTCGACAGTACGCAAATTCGTGGCGCACGCTTGTATACCGATAACGATAT GTTGCCTGCCAGCCAAAACGGATTTGCCCCCGTAGTGCGTGGGATTGCAAAGTCTAACGCCACTGTCATTATTCGCCAGA ATGGCTACGTGATTTATCAGTCAGCCGTTCCACAAGGTGCTTTTGAAATTACCGACCTCAACACCGCCAGTACAGGTGGT GATCTGGACGTAACCATCAAAGAAGAAGACGGTAGCGAACAACGATTTACTCAACCTTATGCGTCGTTAGCCATCCTCAA ACGTGAAGGTCAAACTGATGTTGATGTCAGTGTGGGAGAATTACGCGATGAAGATGGCTTTACCCCTGACGTTATTCAGG CTCAGATCCTTCATGGTTTTCCCTACGGTTTCACCTTGTATGGAGGTATGCAGGCTGCTGAAAAGTATGGTTCTGCCGCT TTGGGTGTCGGTAAAGATCTTGGCGCATTGGGCGCAATTTCTTTCGATGTGACACATGCTCGCGCGAAATTTAGCCATGA TGATACGGAAACCGGTCAGTCTTATCGCTTCCTGTACTCGAAACGCTTTGACGATACGGATACCAGCTTGCGCCTGGTTG GCTATCGTTACTCCACCGAAGGTTATTATACCCTCAATGAATGGGCGTCCCGGCGTAATAATCCTGAAGATTTCTGGGAA ACCGGTAACCGCCGCAGCCGTGTGGAAGGAACGTTAACGCAATCACTGGGCAGAGATTATGGCAACTTATATCTGACATT AAGTCGCCAGCAGTACTGGCATACCGATGATGTTGAACGATTAATGCAATTTGGCTACAGCAGTAGCTGGAAGCGTCTCT CGTGGAACGTCTCCTGGAGTTATTCCAATACTGCCCGGCAGGGGACGGGGAACAACCATGCCAGTGATAACACCAGTGAG CAGATCTACATGCTCTCTTTATCTGTTCCTTTATCGGGCTGGTGGGGGAATAGTTACGCCACCTATTCTGTTTCACAAAA CGATAATTCCGGTAGCTCACATCAACTTGGACTCAGCGGTACGGCGCTGGAAAGAAATAACCTTTCCTGGAATTTAATGC AGTCCTATAACAGCCATGATGATGAGGTTGGCGGTAATATGTCCCTGACCTATGATGGCACTTATGGCACGGTGAACGGC AGCTATAACTACAGCCAAAATTCTCAGAGGCTGAATTATGGTATCAGAGGGGGAATTCTGGCTCACAGCGAAGGCGTAAC GTTAAGCCAGGAGTTGGGTGAAACCATAGCTCTTGTTAAAGCACCAGGGGCTGCCGGGTTAGAAATAGACAATATGCGTG GTGCTGCGACGGACTGGCGTGGTTATACGGTCAAGACACAGCTAAACCCTTATGATGAAAACCGGGTAGCAATCAGCGAT AACTATTTCTCGAAGTCGAATATAGAACTTGATAATACCGTCGTTACGATGGTTCCCACCCGTGGCGCGGTGGTTAAAGC CGAATTTGTTACTCGTGTAGGTTATCGTGTGCTTTTCAGGGTGGCGGGTACAAAAGGTAAACCCGCACCTTTTGGCGCTA TTGCTACAGTACAAAATACAAGCTCCGCTGATTCAGGGATTGTCGGTGACCTGGGGGAGCTTTATCTCTCTGGCCTTCCT GAAAAGGGGCAAGTAATGCTCTCCTGGGGGGAAAATGCCGCCACTACATGCACCTTCGATTATTCAATTTCAATACCAGA AAGTGAAAGCGGCTTAATTGAACAAGGTGTGACATGTCATTAA Protein sequence : MMTTRIKVGLTAGTCLIFSQSLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDN PDADLHACFVAIKKTLTTFGVKVDALKSLNDVDETVCIDPGPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPSRW DEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTTDGSAEYNSISTWIQRDIAALRSQIM IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGG DLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGELRDEDGFTPDVIQAQILHGFPYGFTLYGGMQAAEKYGSAA LGVGKDLGALGAISFDVTHARAKFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNNPEDFWE TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSE QIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGTYGTVNG SYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTRVGYRVLFRVAGTKGKPAPFGAIATVQNTSSADSGIVGDLGELYLSGLP EKGQVMLSWGENAATTCTFDYSISIPESESGLIEQGVTCH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 0.0 | 99 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 95 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 95 |
