Gene Information

Name : lpfC (EcSMS35_4094)
Accession : YP_001746056.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Unknown
Product : long polar fimbrial operon protein LpfC
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 4187436 - 4189958 bp
Length : 2523 bp
Strand : -
Note : identified by similarity to GB:AAL18163.1; match to protein family HMM PF00577

DNA sequence :
ATGATGACGACCAGAATAAAGGTTGGCCTCACGGCAGGGACGTGTCTGATTTTCTCGCAAAGCCTGATGGCCGAGGTCAG
TGTATTCAATCCGGCGCTTCTGGAAATCGACCATCAATCCGGAGTCGATATTCGCCAGTTTAATCGGGCAAACCTGATGC
CCCCAGGTGTTTATAGCGTTGATATTTTTATCAACGGTAAAATGTTTGAACGTCAGGATGTGACCTTTGTTCAGGATAAT
CCCGATGCTGATTTACACGCCTGCTTTGTCGCTATTAAAAAAACGCTAACCACCTTTGGCGTAAAAGTTGATGCGCTGAA
ATCGCTCAATGATGTAGATGAAACAGTCTGTATTGATCCTGGGCCACGCATTGAAGGCTCATCATGGCAGTTCGACAGCG
ATAAACTGCAACTGAATATCTCCATTCCCCAAATCTATATGGATGCGATGGCTTATGATTACATCAGCCCCTCGCGTTGG
GATGAGGGGATTAACGCGCTCACCATCAACTACGATTTTTCTGGTTCACATACTCTACGTTCGGATTATGGTTCACAAGA
GACAGATACCAGTTATCTCAATCTGCGCAATGGACTGAATATTGGGCCGTGGCGATTACGCAATTACAGCACCTTAAATA
CGACCGATGGCAGTGCAGAATACAACTCTATAAGCACCTGGATACAACGTGATATAGCTGCGTTAAGAAGCCAGATTATG
ATAGGTGATACGTGGACGGCGAGCGATATCTTCGACAGTACGCAAATTCGTGGCGCACGCTTGTATACCGATAACGATAT
GTTGCCTGCCAGCCAAAACGGATTTGCCCCCGTAGTGCGTGGGATTGCAAAGTCTAACGCCACTGTCATTATTCGCCAGA
ATGGCTACGTGATTTATCAGTCAGCCGTTCCACAAGGTGCTTTTGAAATTACCGACCTCAACACCGCCAGTACAGGTGGT
GATCTGGACGTAACCATCAAAGAAGAAGACGGTAGCGAACAACGATTTACTCAACCTTATGCGTCGTTAGCCATCCTCAA
ACGTGAAGGTCAAACTGATGTTGATGTCAGTGTGGGAGAATTACGCGATGAAGATGGCTTTACCCCTGACGTTATTCAGG
CTCAGATCCTTCATGGTTTTCCCTACGGTTTCACCTTGTATGGAGGTATGCAGGCTGCTGAAAAGTATGGTTCTGCCGCT
TTGGGTGTCGGTAAAGATCTTGGCGCATTGGGCGCAATTTCTTTCGATGTGACACATGCTCGCGCGAAATTTAGCCATGA
TGATACGGAAACCGGTCAGTCTTATCGCTTCCTGTACTCGAAACGCTTTGACGATACGGATACCAGCTTGCGCCTGGTTG
GCTATCGTTACTCCACCGAAGGTTATTATACCCTCAATGAATGGGCGTCCCGGCGTAATAATCCTGAAGATTTCTGGGAA
ACCGGTAACCGCCGCAGCCGTGTGGAAGGAACGTTAACGCAATCACTGGGCAGAGATTATGGCAACTTATATCTGACATT
AAGTCGCCAGCAGTACTGGCATACCGATGATGTTGAACGATTAATGCAATTTGGCTACAGCAGTAGCTGGAAGCGTCTCT
CGTGGAACGTCTCCTGGAGTTATTCCAATACTGCCCGGCAGGGGACGGGGAACAACCATGCCAGTGATAACACCAGTGAG
CAGATCTACATGCTCTCTTTATCTGTTCCTTTATCGGGCTGGTGGGGGAATAGTTACGCCACCTATTCTGTTTCACAAAA
CGATAATTCCGGTAGCTCACATCAACTTGGACTCAGCGGTACGGCGCTGGAAAGAAATAACCTTTCCTGGAATTTAATGC
AGTCCTATAACAGCCATGATGATGAGGTTGGCGGTAATATGTCCCTGACCTATGATGGCACTTATGGCACGGTGAACGGC
AGCTATAACTACAGCCAAAATTCTCAGAGGCTGAATTATGGTATCAGAGGGGGAATTCTGGCTCACAGCGAAGGCGTAAC
GTTAAGCCAGGAGTTGGGTGAAACCATAGCTCTTGTTAAAGCACCAGGGGCTGCCGGGTTAGAAATAGACAATATGCGTG
GTGCTGCGACGGACTGGCGTGGTTATACGGTCAAGACACAGCTAAACCCTTATGATGAAAACCGGGTAGCAATCAGCGAT
AACTATTTCTCGAAGTCGAATATAGAACTTGATAATACCGTCGTTACGATGGTTCCCACCCGTGGCGCGGTGGTTAAAGC
CGAATTTGTTACTCGTGTAGGTTATCGTGTGCTTTTCAGGGTGGCGGGTACAAAAGGTAAACCCGCACCTTTTGGCGCTA
TTGCTACAGTACAAAATACAAGCTCCGCTGATTCAGGGATTGTCGGTGACCTGGGGGAGCTTTATCTCTCTGGCCTTCCT
GAAAAGGGGCAAGTAATGCTCTCCTGGGGGGAAAATGCCGCCACTACATGCACCTTCGATTATTCAATTTCAATACCAGA
AAGTGAAAGCGGCTTAATTGAACAAGGTGTGACATGTCATTAA

Protein sequence :
MMTTRIKVGLTAGTCLIFSQSLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDN
PDADLHACFVAIKKTLTTFGVKVDALKSLNDVDETVCIDPGPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPSRW
DEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTTDGSAEYNSISTWIQRDIAALRSQIM
IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGG
DLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGELRDEDGFTPDVIQAQILHGFPYGFTLYGGMQAAEKYGSAA
LGVGKDLGALGAISFDVTHARAKFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNNPEDFWE
TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSE
QIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGTYGTVNG
SYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTRVGYRVLFRVAGTKGKPAPFGAIATVQNTSSADSGIVGDLGELYLSGLP
EKGQVMLSWGENAATTCTFDYSISIPESESGLIEQGVTCH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lpfC YP_006098365.1 fimbrial outer membrane usher protein Not tested Tn2411 Protein 0.0 99
lpfC NP_709462.1 long polar fimbriae Not tested SHI-2 Protein 0.0 95
lpfC NP_839216.1 long polar fimbriae Not tested SHI-2 Protein 0.0 95