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Name : EcSMS35_4002 (EcSMS35_4002) Accession : YP_001745965.1 Strain : Escherichia coli SMS-3-5 Genome accession: NC_010498 Putative virulence/resistance : Unknown Product : phage integrase family site specific recombinase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 4081597 - 4082760 bp Length : 1164 bp Strand : + Note : identified by match to protein family HMM PF00589 DNA sequence : ATGGCTCTCACCGATATACAGATCAAACGTGCAAAACCACAAGACAAGCCATACACATTGAACGATGGACAAGGTCTGTC ATTGCTTATCAATCCCGATGGCTCGAAAGGCTGGCGTTTCCGTTTCCGGTTTGCAGGGAAAGCGCGGTTAATGTCATTTG GCAGCTACGATTTAGTAAGCCTCGCAGAAGCACGTGAGAAGCGTGATATCGCCCGTAAGCAGGTTGCTAATGGCATTGAC CCGGTAGAGGAACGCAAAGCTTTAAGACTCGCCCAAAAGCTATCAACAGAAAATTCTTTCGAAGCAATATGTCGAGAATG GCATACCAACAAAGCTGACCGCTGGACTGTGGCCTATCGAGAAGAAATCATTAAGACATTCGAGCAAGATGTCTTCCCGT TCATTGGTAAACGTCCTATCAGTGAAATCAAACCATTAGAACTGCTTGAAGTATTACGACGAATCGAAAAACGTGGAGCA CTAGAGAAAACACGCAAGGTGCGTCAAAGATGCGGTGAGGTTTATCGCTATGCAATCATAACTGGCCGTGCTGAGTACAA TCCTGCACCTGATTTAGCTATCGCTCTGGCCGTTCCCAAGCAAAAACACCATCCATTTTTATCCGCTGAAGAGTTGCCTC ATTTTATTCGAGATCTTGAAGCGTATACCGGTAGCATCATCACCAAAAATGCTACGAAGATAGTCATGCTGACTGGTGTA AGAACGCAGGAGATGCGCTTTGCTACGTGGGAAGAAGTAGACCTCGAAAAAGGTATATGGGAGATACCAGCGGAACGTAT GAAAATGCGTAGACCTCACATTGTTCCTTTATCTACTCAGGTAGTTGACCTTTTCAAACAGCTCAAACCTATTACCGGCC ATTACCCTTACATCTTTATTGGCAGGAACAACCGCAGCAAGCCAATCTCAAAAGAAAGTGTTTCACAAGTGATTGAGTTA ATTGGCTACAAAGGCCGTGCTACAGGTCACGGTTTTCGGCATACCATGTCGACAATATTGCACGAACAAGGGTTTGATAG CGCATGGATTGAAATACAATTGGCACATGTTGATAAAAACAGAATCCGAGGGACTTACAATCATGCTCAATATCTTGAAC ATAGAAAAAAAATGATGCAATGGTATTCAGATAAATTATATTGA Protein sequence : MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVSLAEAREKRDIARKQVANGID PVEERKALRLAQKLSTENSFEAICREWHTNKADRWTVAYREEIIKTFEQDVFPFIGKRPISEIKPLELLEVLRRIEKRGA LEKTRKVRQRCGEVYRYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIVMLTGV RTQEMRFATWEEVDLEKGIWEIPAERMKMRRPHIVPLSTQVVDLFKQLKPITGHYPYIFIGRNNRSKPISKESVSQVIEL IGYKGRATGHGFRHTMSTILHEQGFDSAWIEIQLAHVDKNRIRGTYNHAQYLEHRKKMMQWYSDKLY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 5e-140 | 71 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 2e-140 | 71 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 3e-138 | 71 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 5e-139 | 70 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 7e-139 | 70 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 7e-139 | 70 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 5e-139 | 70 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 1e-137 | 70 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 2e-137 | 70 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 2e-137 | 70 |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 3e-111 | 58 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 9e-112 | 55 |
| intA | AAB00935.1 | integrase A | Not tested | vap locus | Protein | 2e-59 | 42 |
| int | AAN62223.1 | putative integrase | Not tested | PAGI-3(SG) | Protein | 2e-63 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| EcSMS35_4002 | YP_001745965.1 | phage integrase family site specific recombinase | VFG0783 | Protein | 3e-139 | 70 |
| EcSMS35_4002 | YP_001745965.1 | phage integrase family site specific recombinase | VFG0598 | Protein | 7e-138 | 70 |
