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Name : gspF (EcSMS35_3245) Accession : YP_001745225.1 Strain : Escherichia coli SMS-3-5 Genome accession: NC_010498 Putative virulence/resistance : Virulence Product : general secretion pathway protein GspF Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 3315401 - 3316624 bp Length : 1224 bp Strand : - Note : identified by similarity to GB:AAL60186.1; match to protein family HMM PF00482; match to protein family HMM TIGR02120 DNA sequence : ATGGCACTGTTTTACTATCAGGCGCTGGAGCGTAATGGTCGCAAAACCAAAGGCATGATTGAGGCGGATTCCGCGCGTCA TGCCCGTCAATTGTTACGCGGTAAAGACCTCATTCCCGTGCACATTGAAGCCCGGATGAATGCATCGGCAGGGGGAATGT TGCAGCGTCGGCGGCACGCACATCGTCGCGTGGCGGCGGCAGATCTGGCGCTGTTCACTCGTCAACTGGCAACGCTGGTG CAGGCAGCAATGCCGCTGGAAACCTGCTTACAGGCGGTCAGTGAGCAAAGCGAAAAACTGCATGTAAAAAGCCTCGGAAT GGCGCTGCGCAGCCGGATTCAGGAAGGTTATACCCTGTCGGACAGCCTGCGCGAACATCCCCGCGTCTTTGACTCCCTGT TTTGTTCGATGGTCGCCGCCGGAGAAAAATCCGGGCATCTCGACGTGGTGCTCAATCGCCTGGCGGATTACACCGAACAG CGGCAGCGTCTGAAATCACGCCTGCTGCAGGCCATGCTCTATCCGCTGGTTCTGCTGGTGGTGGCAACGGGCGTAGTCAC TATTTTGCTGACGGCAGTGGTGCCGAAAATTATCGAACAGTTTGATCATCTCGGACACGCGCTACCCGCCTCCACCCGAA TGCTCATCGCTATGAGCGACGCGTTACAGGCCAGCGGCGTGTACTGGCTGGCGGGTTTGCTGGGGCTTCTGGTGCTGGGG CAACGGTTACTCAAAAATCCTGCGATGCGCCTGCGCTGGGATAAAACCTTGCTGCGCCTGCCCGTGACGGGGCGTGTTGC GCGCGGACTGAATACGGCGCGTTTTTCCCGCACGTTAAGCATCCTCACCGCCAGCAGTGTTCCGCTGCTGGAAGGCATTC AGACCGCCGCCGCCGTGTCGGCAAATCGTTATGTCGAGCAACAACTGCTGCTGGCGGCAGATCGCGTCCGCGAAGGAAGC AGCCTGCGCGCCGCGCTGGCGGATCTGCGCCTGTTCCCGCCGATGATGCTGTACATGATCGCCTCCGGCGAACAGAGCGG CGAGCTGGAAACCATGCTTGAACAGGCCGCGATCAACCAGGAACGGGAATTTGATACCCAGGTGGGTCTGGCGTTAGGGC TGTTTGAGCCGGCGCTGGTGGTGGTGATGGCGGGCGTGGTGCTGTTTATCGTCATCGCCATCCTCGAACCGATGCTGCAA CTGAACAATATGGTTGGAATGTAA Protein sequence : MALFYYQALERNGRKTKGMIEADSARHARQLLRGKDLIPVHIEARMNASAGGMLQRRRHAHRRVAAADLALFTRQLATLV QAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ RQRLKSRLLQAMLYPLVLLVVATGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYWLAGLLGLLVLG QRLLKNPAMRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGS SLRAALADLRLFPPMMLYMIASGEQSGELETMLEQAAINQEREFDTQVGLALGLFEPALVVVMAGVVLFIVIAILEPMLQ LNNMVGM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 1e-154 | 99 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-154 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_001745225.1 | general secretion pathway protein GspF | VFG2049 | Protein | 2e-147 | 97 |
| gspF | YP_001745225.1 | general secretion pathway protein GspF | VFG0181 | Protein | 1e-68 | 47 |
