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Name : gspM (EcSMS35_3238) Accession : YP_001745218.1 Strain : Escherichia coli SMS-3-5 Genome accession: NC_010498 Putative virulence/resistance : Virulence Product : putative general secretion pathway protein YghD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3149 EC number : - Position : 3310702 - 3311238 bp Length : 537 bp Strand : - Note : identified by similarity to SP:Q46832; match to protein family HMM PF04612 DNA sequence : ATGTTACGCGATAAATTTATTCACTATTTTCAGCAATGGTGTGAACGCCAGTTAAGCCGTGGCGAACACTGGCTGACACA ACACCTGGCGGGGCGTTCTCCGCGTGAAAAAGGCATGTTACTGGCAGCGGCGGTGTTCCTGTTTAGCGCCGGATATTACG TTCTCATCTGGCAGCCGTTGAGCGAACGGATTGAGCAACAGGAGACGATGTTGCAGCAGCTCGTGGCGATGAACTCCCGG ATGAAGAACGCCGCGCCGGATATTATTGCGGCGCGAAAATCCGCCACGACAACGCCAGCACAGGTATCGCGGGTCATCAG TGACAGCGCTTCCGCGCACTCGGTGGTCATCAAACGGATTGCCGAGCGTGGGGAGAATATTCAAGTCTGGATAGAACCTG TGGTGTTTAATGACCTGCTGAACTGGTTAAAGGCACTGGATGAAAAATATGCGCTGCGGGTGATACAAATTGATGTCAGC GCAGGTGAGAAGCTTGGGATGGTGAATGTGCAGCGACTGGAGTTTGGACGGGGGTAG Protein sequence : MLRDKFIHYFQQWCERQLSRGEHWLTQHLAGRSPREKGMLLAAAVFLFSAGYYVLIWQPLSERIEQQETMLQQLVAMNSR MKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWIEPVVFNDLLNWLKALDEKYALRVIQIDVS AGEKLGMVNVQRLEFGRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspM | CAE85225.1 | GspM, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-76 | 94 |
| gspM | YP_854398.1 | general secretion pathway protein YghD | Not tested | PAI I APEC-O1 | Protein | 4e-75 | 94 |
| yghD | CAI43907.1 | putative secretion pathway protein | Not tested | LEE | Protein | 2e-75 | 93 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspM | YP_001745218.1 | putative general secretion pathway protein YghD | VFG2056 | Protein | 1e-55 | 93 |
