Gene Information

Name : EcSMS35_3204 (EcSMS35_3204)
Accession : YP_001745187.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : K : Transcription
COG ID : COG2378
EC number : -
Position : 3281662 - 3282342 bp
Length : 681 bp
Strand : +
Note : identified by match to protein family HMM PF08279

DNA sequence : 
ATGTCTGATAATCGTTCCCGGCATGATCGCCTGGCGGTTCGCTTATCACTCATTATCAGCCGACTGATGGCCGGAGAATC
TCTGTCACTAAAAACACTATCAGATGAATTTGGTGTTACAGAACGTACCTTACAGCGCGATTTTCATCAGCGCCTGGTTC
ACCTGGACTTAGAGTACAGAAATGGCCGGTACAGTCTCAGACGACAGAGCAGCCCAGGTGCGATCCCTGAAATGCTTTCT
TTTATACAGAATACCGGGATCGCACGGATACTTCCGCTCCGGAACGGACGACTGATAACCTGTCTTACCGACAACCAGGA
GCCCTCTCCCTGCCTTATCTGGCTACCGGCGCCGGATATCACTGCAACGTTCCCCGAGTGTTTCTCGCAACTCATCCTGG
CAATAAGACAGTGTATCCACATCTCTCTGATGACTGAGCGATGGTATCCGTCACTGGAGCCCTGCCGGCTCATTTATTAC
AGCGGTAGCTGGTATCTGATCGCGTTACAGAAGGGAAAACTGCAGGTCTTTCCTCTGGCAGATATCAAATCAGTCAGCCT
GACATCAGAACGGTTTGAACGGAGAGGCCACATCCACAGTCTGGTCGCTGAAGAGCGTTTTATCTCCGCCCTGCCACATT
TCTCTTTCATCCATAAACTTATCAACACCTTTAACCTGTGA

Protein sequence : 
MSDNRSRHDRLAVRLSLIISRLMAGESLSLKTLSDEFGVTERTLQRDFHQRLVHLDLEYRNGRYSLRRQSSPGAIPEMLS
FIQNTGIARILPLRNGRLITCLTDNQEPSPCLIWLPAPDITATFPECFSQLILAIRQCIHISLMTERWYPSLEPCRLIYY
SGSWYLIALQKGKLQVFPLADIKSVSLTSERFERRGHIHSLVAEERFISALPHFSFIHKLINTFNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42094.1 hypothetical protein Not tested PAI II 536 Protein 2e-104 100
unnamed CAD33782.1 hypothetical protein Not tested PAI I 536 Protein 7e-104 99
yfjR AAZ04453.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 4e-104 99
c5160 NP_757008.1 transcriptional regulator YfjR Not tested PAI II CFT073 Protein 1e-103 99
APECO1_3492 YP_854319.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 6e-104 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcSMS35_3204 YP_001745187.1 hypothetical protein VFG1613 Protein 1e-104 100
EcSMS35_3204 YP_001745187.1 hypothetical protein VFG1523 Protein 4e-104 99