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Name : shiF (EcSMS35_3183) Accession : YP_001745173.1 Strain : Escherichia coli SMS-3-5 Genome accession: NC_010498 Putative virulence/resistance : Virulence Product : transport protein ShiF Function : - COG functional category : - COG ID : - EC number : - Position : 3265340 - 3266533 bp Length : 1194 bp Strand : + Note : identified by match to protein family HMM PF07690 DNA sequence : ATGTCATCTAAGATCGAAGATACGCCCCAAAAAACCCTGTCCTGCTGGCCACTGGCGTTCAGTGCCGGTCTTCTCGGTAT CGGACAGAACGGTCTGCTGGTTGTACTCCCTGTTCTGGTCATACAGACAAATCTGAGTCTGTCTGTATGGGCTGCCCTGC TGATGCTGGGCTCAATGCTGTTTCTGCCATCTTCCCCATGGTGGGGAAAGCAAATTTCCCTTACTGGCAGTAAGACTGTG GTGCTGTGGGCTCTGGGAGGATATGGCGTAAGCTTTACCCTGCTTGGGCTGGGAAGCGTGCTGATGGCTACCGGTGCCGT AACAAAAGCGGTGGGGTTGGGAATATTAATCATCGCCCGGATCGTCTACGGTCTGACCGTGTCAGCAATGGTGCCAGCCT GTCAGGTCTGGGCATTGCAGAGAGCGGGAGAAGGGAATCGCATGGCCGCTCTGGCAACCATCAGCTCCGGCCTGAGCTGC GGCAGGCTATTCGGGCCGCTGTGCGCGGCGGCAATGTTGGTCATTCACCCTCTGGCGCCAGTGTGGATGCTGATGGCAGC GCCAGCGCTGGCACTGGTGATGCTTCTGCGGTTGCCCGGCACACCACCACAGCCCACACCGGAGCGCAAGAGCGTCAGCC TGAAGCGGGATTTCCTGCCTTATCTGCTTTGCGCAATGTTACTGGCTGCGGCAATGAGCATGATGCAGCTTGGACTTTCG CCAGCCCTTACTCGCCAGTTCGCCACTGATACCACCACTATTAGCCAACAGGTAGCGTGGTTGTTGGGGCTGTCCGCAAT AGCTGCGCTTATCGCGCAGTTCGTGGTACTCCGTCCACAGCGCCTGACTCCAGTGGCTCTGCTCCTGAGTGCCGGGGTGT TGATGAGTAGTGGTCTGGCTATCATGCTCGCTGAACAGCTATGGTTGTTTTACCTAGGCTGTGCAGTGCTGTCATTTGGA GCTGCTCTGGCAACCCCCGCTTATCAACTTTTACTGAATGATAAGCTGGCCGACGGCGCAGGCGCGGGCTGGCTCGCTTG CAGTCACACACTTGGCTATGGGCTTTGCGCGTTGTTGGTACCATTGGTGTCGAAAACAGGTGTCGCAATAGCACTGATTG TGATGGCATTATTTGCCGCTGTATTATTTAGCATGGTGACTGTATTTATCTGGCGCTGCTGCAAAAGCAAGTAA Protein sequence : MSSKIEDTPQKTLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTNLSLSVWAALLMLGSMLFLPSSPWWGKQISLTGSKTV VLWALGGYGVSFTLLGLGSVLMATGAVTKAVGLGILIIARIVYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC GRLFGPLCAAAMLVIHPLAPVWMLMAAPALALVMLLRLPGTPPQPTPERKSVSLKRDFLPYLLCAMLLAAAMSMMQLGLS PALTRQFATDTTTISQQVAWLLGLSAIAALIAQFVVLRPQRLTPVALLLSAGVLMSSGLAIMLAEQLWLFYLGCAVLSFG AALATPAYQLLLNDKLADGAGAGWLACSHTLGYGLCALLVPLVSKTGVAIALIVMALFAAVLFSMVTVFIWRCCKSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| imm | NP_839224.1 | membrane transport protein | Not tested | SHI-2 | Protein | 2e-123 | 91 |
| imm | NP_709453.1 | membrane transport protein | Not tested | SHI-2 | Protein | 2e-123 | 91 |
| shiF | AAD44744.1 | ShiF | Virulence | SHI-2 | Protein | 1e-123 | 91 |
| shiF | YP_002414047.1 | putative membrane transport protein, major facilitator superfamily | Not tested | Not named | Protein | 5e-123 | 90 |
| unnamed | AAD54670.1 | unknown | Not tested | SHI-2 | Protein | 6e-123 | 90 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| shiF | YP_001745173.1 | transport protein ShiF | VFG0614 | Protein | 8e-124 | 91 |
