Gene Information

Name : sitD_2 (EcSMS35_3173)
Accession : YP_001745167.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Virulence
Product : iron/manganese transport system membrane protein SitD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3253765 - 3254643 bp
Length : 879 bp
Strand : +
Note : identified by similarity to GB:AAT11267.1; match to protein family HMM PF00950

DNA sequence : 
ATGATGGCATTATTACTGGAGCCACTGCAGTTCACCTTTATGAGTCACGCACTGCTGATTTCACTGGTAGTTTCCATACC
CTGTGCGCTGCTGTCGGTCTTTCTGGTCCTGAAAGGTTGGGCACTGATGGGAGACGCGATGAGTCATGCGGTTTTTCCTG
GTATCGTGCTTGCGTGGATACTGGGTTTTCCTCTGGCGGGAGGAGCATTTGTCGCCGGAGTATTCTGCGCGGTGGCGACG
GGATACCTGAAAGACAACAGCCGAATCAAGCAAGATACAGTGATGGGGATTGTTTTTTCTGGCATGTTTGCCGCAGGTCT
GATCTTGTATATTGCAGTCAAACCCGACGTACATCTTGACCATATTCTTTTCGGCGACATGCTCGGGGTAACCATCGGCG
ATATAATCCAGACGGTGATTATTGCCGGGCTGGTTACACTTGTTATTAGCGTAAAATGGCGGGATTTTTTGCTGTTCAGC
TTTGATTATCAACAGGCGCAGGTAAGCGGTTTGCATACGAGATGGCTGCATTATGGGCTGCTGTGCATGGTCTCTCTGAC
CATTGTGGCGACGCTGAAAGCGGTAGGTATCATTCTCTCCATTTCTCTGCTCATTGCGCCTGGCGCCATTGCGGTACTCC
TGACGCAACGCTTTCATATTGCGCTCCTGCTGGCGCTCGGTATATCGGTAATGGTCTCAATGACTGGTGTATGGCTCTCC
TTTTTTATAGACAGCGCACCAGCACCAACGATTGTTATCTTATTCACGGTTGTATTCATCCTGACGTTTACCGCTTCCAG
CATCAATGCTCACGCGAAGGAAAATGTCGATCCACAGGATCTCCCGACTAGTACAACAACCAGAGAGCAACATCTGTAG

Protein sequence : 
MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAWILGFPLAGGAFVAGVFCAVAT
GYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAVKPDVHLDHILFGDMLGVTIGDIIQTVIIAGLVTLVISVKWRDFLLFS
FDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLALGISVMVSMTGVWLS
FFIDSAPAPTIVILFTVVFILTFTASSINAHAKENVDPQDLPTSTTTREQHL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-79 71
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-79 71
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-79 71
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-79 71
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-79 71

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD_2 YP_001745167.1 iron/manganese transport system membrane protein SitD BAC0352 Protein 8e-80 71
sitD_2 YP_001745167.1 iron/manganese transport system membrane protein SitD BAC0442 Protein 3e-57 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD_2 YP_001745167.1 iron/manganese transport system membrane protein SitD VFG0528 Protein 8e-80 71