Gene Information

Name : sitB_2 (EcSMS35_3171)
Accession : YP_001745165.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Virulence
Product : iron/manganese transport system inner membrane protein SitB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3252087 - 3252914 bp
Length : 828 bp
Strand : +
Note : identified by similarity to GB:AAT11265.1; match to protein family HMM PF00005

DNA sequence : 
ATGATGCAATCTGCGGGTATTGTCGTTAATGGCGTTACTGTCACCTGGCGAAACGGGCAGAAAGCACTGCGCGATGCATC
CTTCACAGTACCAGGCGGATCTATTGCCGCTCTGGTTGGGGTAAACGGTTCCGGAAAATCGACGTTATTTAAAGCGATTA
TGGGATTCGTGCGTCTGACTACCGGAAAGATATCTGTTCTGGGTATTCCCACGCGGCAGGCTCTGCAGAAAAACCTGATT
GCCTACGTCCCGCAGTCAGAAGAAGTGGACTGGTCCTTTCCTGTACTGGTGGAAGATGTGGTGATGATGGGCCGCTATGG
GCATATGGGTATGTTGCGTATAGCCAATAAGAGGGATCGTCAGGTTGTCACCGATGCGCTGGAACGTGTCGATATGGTAG
ATTTTCGCCATCGACAAATCGGCGAGCTTTCCGGTGGACAAAAGAAACGCGTCTTTCTGGCGAGAGCGATTGCACAGCAG
GGTGATGTGATCCTGCTGGATGAACCTTTTACCGGCGTTGATGTGAAAACCGAAGCCAAAATCATCAGCCTGTTGAGGGA
GTTACGCGCGGAAGGCAAAACGATGCTTGTCTCAACGCACAATCTCGGATCCGTCACGACATTTTGCGATTATACGGTCA
TGGTCAAAGGCACCGTCCTGGCAAGCGGGCCGACAGACACCACTTTTACAGCCGAGAACCTGGAGCTGGCTTTTAGCGGC
GTACTACGCCATGTCACACTTAAAGGCTCGGAAGAAAGCATTATTACTGACGATGAACGCCCCTTTGTGGCTTATCGACC
ATCAGCGGTGCAGAGGGAAGAAAGATGA

Protein sequence : 
MMQSAGIVVNGVTVTWRNGQKALRDASFTVPGGSIAALVGVNGSGKSTLFKAIMGFVRLTTGKISVLGIPTRQALQKNLI
AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGMLRIANKRDRQVVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQ
GDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGTVLASGPTDTTFTAENLELAFSG
VLRHVTLKGSEESIITDDERPFVAYRPSAVQREER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-100 78
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-100 78
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-99 77
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-99 77
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-99 77

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB_2 YP_001745165.1 iron/manganese transport system inner membrane protein SitB BAC0350 Protein 2e-99 77
sitB_2 YP_001745165.1 iron/manganese transport system inner membrane protein SitB BAC0440 Protein 1e-80 61
sitB_2 YP_001745165.1 iron/manganese transport system inner membrane protein SitB BAC0400 Protein 9e-45 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB_2 YP_001745165.1 iron/manganese transport system inner membrane protein SitB VFG0526 Protein 2e-99 77