Gene Information

Name : EcSMS35_3137 (EcSMS35_3137)
Accession : YP_001745148.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Unknown
Product : IS66 family transposase orfA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 3223526 - 3223951 bp
Length : 426 bp
Strand : -
Note : identified by match to protein family HMM PF01527

DNA sequence :
ATGGAATTACAGGACTGGCGAAAAGAACCTCGTAAAAACTATTCGAATGAATTCAAACTTCGTATGGTGGAACTGGCATC
ACAACCTGGAGCTTGTGTTGCACAGATTGCACGTGAAAATGGCGTCAATGATAATGTTATTTTCAAATGGCTCAGGCTCT
GGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAA
ATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTATCCACTTCCACTCAGACCAGAGTCAGTGC
CAGTTCCTGCAAGGTGGAATTCCGTCACGGTAACATGACGCTGGAAAATCCATCGCCAGAGCTGCTCACAGTGTTGATCC
GTGAACTGACCGGGAGGGGAAGATGA

Protein sequence :
MELQDWRKEPRKNYSNEFKLRMVELASQPGACVAQIARENGVNDNVIFKWLRLWQNEGRVSRRLPVTTSSDTGVELLPVE
ITPDEQKEPVAAIAPSLSTSTQTRVSASSCKVEFRHGNMTLENPSPELLTVLIRELTGRGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3566 YP_003223429.1 hypothetical protein Not tested LEE Protein 1e-60 98
Z1208 NP_286743.1 hypothetical protein Not tested TAI Protein 2e-57 92
Z1648 NP_287151.1 hypothetical protein Not tested TAI Protein 1e-56 91
unnamed CAD66197.1 hypothetical protein Not tested PAI III 536 Protein 2e-45 90
Z1159 NP_286694.1 hypothetical protein Not tested TAI Protein 6e-49 82
Z1598 NP_287102.1 hypothetical protein Not tested TAI Protein 6e-49 82
unnamed CAD66191.1 hypothetical protein Not tested PAI III 536 Protein 5e-46 76
ECUMN_3365 YP_002414038.1 putative transposase Not tested Not named Protein 2e-32 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcSMS35_3137 YP_001745148.1 IS66 family transposase orfA VFG1672 Protein 1e-45 90
EcSMS35_3137 YP_001745148.1 IS66 family transposase orfA VFG1666 Protein 2e-46 76
EcSMS35_3137 YP_001745148.1 IS66 family transposase orfA VFG1738 Protein 5e-33 56