Gene Information

Name : EcSMS35_0308 (EcSMS35_0308)
Accession : YP_001742412.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Virulence
Product : RadC family DNA repair protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 317136 - 317615 bp
Length : 480 bp
Strand : +
Note : identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608

DNA sequence : 
ATGGAACAGTCACTTATCCCACTGGCTCCGGCATTACCACTAACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCT
TGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCCCGCGACTGGCTGAAACTGAAAATGGCGG
GACTGGAGCGCGAAGAGTTTATGGTGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGT
TCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTACTTCAATGCGGCAGCAGTGATACTGGC
GCATAACCATCCCTCCGGAGACACCTCGCCCAGCAAGGCAGATAAGACCATCACGCAGCGTCTGGTGCAGGCGCTTCAGC
TCGTTGATATCCGTGTGCCTGACCACCTTATCGTCGGTGGTACGCAGATATTGTCGTTCGCTGAACACGGTCTGCTTTGA

Protein sequence : 
MEQSLIPLAPALPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMVLYLNQQNQLIAHETLFAG
SISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTSPSKADKTITQRLVQALQLVDIRVPDHLIVGGTQILSFAEHGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-50 80
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 1e-49 80
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 6e-50 80
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 4e-50 80
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 3e-50 80
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 3e-50 80
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-50 80
unnamed AAL08475.1 unknown Not tested SRL Protein 5e-50 80
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 4e-50 80
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 4e-50 80
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-50 80
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-50 80
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 1e-50 79
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-48 79
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 3e-50 79
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 3e-50 78
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 5e-50 78
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 5e-50 78
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 4e-50 78
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-26 51
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-26 51
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-26 51
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 6e-24 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-25 45
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 6e-26 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcSMS35_0308 YP_001742412.1 RadC family DNA repair protein VFG1528 Protein 2e-50 80
EcSMS35_0308 YP_001742412.1 RadC family DNA repair protein VFG1617 Protein 1e-50 80
EcSMS35_0308 YP_001742412.1 RadC family DNA repair protein VFG0660 Protein 6e-51 80
EcSMS35_0308 YP_001742412.1 RadC family DNA repair protein VFG1066 Protein 2e-50 80
EcSMS35_0308 YP_001742412.1 RadC family DNA repair protein VFG1678 Protein 5e-51 79
EcSMS35_0308 YP_001742412.1 RadC family DNA repair protein VFG1119 Protein 2e-26 51