Gene Information

Name : EcSMS35_0307 (EcSMS35_0307)
Accession : YP_001742411.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Virulence
Product : antirestriction protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 316666 - 317124 bp
Length : 459 bp
Strand : +
Note : identified by match to protein family HMM PF03230

DNA sequence :
ATGACGACACAAACGCAATGCGAATTGATGTCCGCTAATGAACCTCAATTTGACCTCACTGCAACACCAGTACCTGACGA
GCAGCGTCTCGATTTCTGGCCGCTGCACTTTGGTGCTATCACGCAGTGGATAACGCTGGAACCCCGTATTTTCGCCTGGA
TGGATCGCTTCTGTGATGAGTACAGCGGTGGTCTCTGGTCCTTTTACACGCTCAGCAATGGCGGTGCGTTTATGGCCCCT
GATGCTGAGGGGGGCGATAAATGGCATCTGTTCAACGGCATGAACGGCAATGGTGCGGAAATGAGCGCAGAAGCCGCAGG
TATTGCTGTCTGCCTGATTGAATACAGCCATCACGCCTGTCACACCGAATGCGATGCCATGACTGAACACTATTACCGGC
TGCGGGATTACTCTCTGCAGCACCCAGAATCCAGCGCCATTCTGCGCATTATTGATTAA

Protein sequence :
MTTQTQCELMSANEPQFDLTATPVPDEQRLDFWPLHFGAITQWITLEPRIFAWMDRFCDEYSGGLWSFYTLSNGGAFMAP
DAEGGDKWHLFNGMNGNGAEMSAEAAGIAVCLIEYSHHACHTECDAMTEHYYRLRDYSLQHPESSAILRIID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAI43899.1 hypothetical protein Not tested LEE Protein 1e-44 72
Z1216 NP_286751.1 hypothetical protein Not tested TAI Protein 3e-45 71
Z1656 NP_287159.1 hypothetical protein Not tested TAI Protein 3e-45 71
unnamed AAL67346.1 intergenic-region protein Not tested PAI II CFT073 Protein 3e-44 71
S3200 NP_838483.1 hypothetical protein Not tested SHI-1 Protein 5e-44 71
SF2995 NP_708769.2 hypothetical protein Not tested SHI-1 Protein 5e-44 71
yfjX CAE85200.1 YfjX protein Not tested PAI V 536 Protein 4e-43 69
ECO103_3588 YP_003223445.1 hypothetical protein Not tested LEE Protein 3e-44 69
aec72 AAW51755.1 Aec72 Not tested AGI-3 Protein 1e-46 69
unnamed CAD42097.1 hypothetical protein Not tested PAI II 536 Protein 6e-47 68
unnamed CAI43844.1 hypothetical protein Not tested LEE Protein 2e-47 68
yfjX ADD91703.1 YfjX Not tested PAI-I AL862 Protein 3e-46 68
unnamed CAD66202.1 hypothetical protein Not tested PAI III 536 Protein 8e-49 67
z1216 CAD33786.1 Z1216 protein Not tested PAI I 536 Protein 1e-48 66
yfjX YP_854322.1 hypothetical protein Not tested PAI I APEC-O1 Protein 9e-44 63
ORF_48 AAZ04457.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 6e-44 63
c5155 NP_757003.1 hypothetical protein Not tested PAI II CFT073 Protein 9e-44 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcSMS35_0307 YP_001742411.1 antirestriction protein VFG0659 Protein 1e-44 71
EcSMS35_0307 YP_001742411.1 antirestriction protein VFG1616 Protein 2e-47 68
EcSMS35_0307 YP_001742411.1 antirestriction protein VFG1677 Protein 3e-49 67
EcSMS35_0307 YP_001742411.1 antirestriction protein VFG1527 Protein 6e-49 66