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Name : EcSMS35_2496 (EcSMS35_2496) Accession : YP_001744540.1 Strain : Escherichia coli SMS-3-5 Genome accession: NC_010498 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2541162 - 2543810 bp Length : 2649 bp Strand : - Note : yfcU; identified by match to protein family HMM PF00577 DNA sequence : ATGCCTAATCACTCAAATTTTCGGCTGCGGGGAATCGCCTGCTATATTGCGCTGGCAATCTCAGGTGGATCAGTCAATGC ATGGGCTGATGATTCCATTCAATTTGACCCCCGTTTCCTTGAGTTAAAGGGCGACACGAAAATTGATCTCGGTAAGTTTT CAAAAAAAGGGTATGTCGACGCGGGAAAATATAATTTACGTGTATTTATAAATAAACAACCCCTTTCTGATGAATACGAC ATTAACTGGTATGTTTCTGAAAACGATCCAACAAAAACGTATGCCTGCCTGACACCTGAGTTAGTGGCGGCGCTGGGGCT GAAAGAAGGGATAGCAAAAAGCCTGCAGTGGACGCACAACGATGAATGCCTTAAACCGGGGCAATTAGATGGGATGGAAG TCGAGAATGATTTAAGCCAGTCGGCGTTGCTGCTGACAGTGCCACAGGCTTATCTCGAATATACCAGCAGCGACTGGGAC CCACCCTCACGCTGGGACGACGGTATTCCTGGCCTGATTGCCGACTACAGCCTCAATGCGCAAACCCGCCACCAGGAGCA GGGTGGCGAGGACTCACATGATATCAGCGGCAACGGTACCGTTGGGGCGAACCTGGGGGCATGGCGTTTCCGCGCAGACT GGCAAAGTGATTATCAGCACACCCGCAGCAACGATGACGACGATGACAGCAGTAACAGTACAACGAGCAAAAACTGGGAC TGGAGCCGTTATTACGCCTGGCGGGCCTTACCCTCTTTAAAAGCGAAGCTGTCGCTGGGGGAAGATTATCTCAATTCCGA TATTTTCGACGGCTTTAACTATATTGGCAGCAGCGTCAGCACCGATGACCAGATGCTGCCGCCCAACCTGCGCGGCTATG CGCCGGATGTCTCCGGCGTGGCGCACAGCAGTGCAAAAGTCACCATTAGCCAGATGGGCCGGGTACTTTACGAAACCCAG GTTCCCGCCGGGCCATTCCGCATTCAGGATATCGGCGACTCCGTCTCCGGCACACTGCACGTCCGCGTTGAAGAACAGAA TGGTCAGGTGCAGGAATATGACGTTACGACCGCATCTATGCCATTCCTCACGCGCCAGGGGCAGGTGCGTTACAAAGTGA TGATGGGGCGTCCGGAAGACTGGAACCACAAGACCGAAGGCGGCTTTTTCTCCGGCGGAGAAGCGTCATGGGGGGTGGCA GATGGCTGGTCGCTCTACGGTGGCGCGCTGGCAGATGAACACTACCAGTCGGCGGCGATGGGGGTGGGGCGCGACCTCGC ACAGTTTGGCGCGCTGGCGTTCGATGTGACTCACTCGCACGTCAACCTGGATCATGACAGCGCATACGGCAAAGGAAAAC TGGACGGCAACTCCTTTCGCGTGAGCTATGCCAAAGACTTTGACGAACTCAACAGCCGCGTCACCTTTGCAGGCTACCGT TTTTCTGAAAAGAACTTCATGACCATGAGCGAGTATCTGGACGCGAACCAGTCGGACATGGCGCGGACCGGTAACGACAA AGAGATGTATACGATCACCTATAACCAGAACTTTGCCGCTGCGGGTGTCTCGATCTATCTCAACTACTCCCATCGTACTT ACTGGGATCGCCCGGAACAGACAAACTATAACCTGATGTTTTCCCACTATTTTAATATGGGGAGCATTCGCAACGTGAGC ATCTCGGTGACCGGCTATCGCTACGAATATGACGATAACGCGGATAAGGGGATGTACCTCAGCATGAGCATTCCGTGGAG CGACAGCAGCACCGTGACCTACAACGGTTCCTACGGCAGCGGGTCGGACAGCAGCCAGGTCGGTTACTTTAAGCGCGTTG ATGACGCAACGCACTACCAGGTTAACGTCGGTACCAGCGAACAGCACGGCAGCGTGGATGGTTATCTGAGTCACGACGGC TCGCTGGCGAAGGTTGATCTCAGCGCCAACTACCATGAGGGGGAATACCGCTCGGCGGGGATCGCCTTACAGGGCGGGGC AACGCTGACCGCGCATGGTGGGGCGCTGCATCGCACTCAAAGCATGGGCGGTACGCGCCTGCTGATTGACGCCGACGGGA TTGCCAATGTGCCGGTCGAAAGCAACGGCGCGCCGGTGTACACCAATATGTTTGGCAAGGCGGTGGTCGCCGATATTAAC AACTACTATCGCAATCAGGCGTATATCGATTTAAACAACCTGCCAGAAGATGCGGAAGCCACCCAGTCGGTGGTACAGGC AACCCTGACGGAAGGTGCAATTGGCTATCGCAAATTCAAAGTGATCAGCGGGCAAAAAGCGATGGCGGTACTGCGGTTGC GTGACGGCAGCTACCCGCCGTTTGGCGCGGAAGTGAAAAACGACGAGCAGCAGCAGGTTGGCATTGTGGATGATGAAGGC AATGTCTATCTGGCGGGAGTCAATGCGGGTGAGCATATGACGGTGTTCTGGGAAGGCAGCGCACAATGCGAGATCGTATT GCCGAAGCCGCTACCTGCCGATCTGTTCAGCGGCCTGTTGTTGCCGTGTGAACAAAAGGGAACGGCAGCCCCTGATTCTT CAGCGCCAGAAATTAAGCCTGTTATTCAGGACCAGACGCGGCAAGTCACACCAACGGAAGCGCCGACGTCAATTTCAGCT ACTCAATAA Protein sequence : MPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGYVDAGKYNLRVFINKQPLSDEYD INWYVSENDPTKTYACLTPELVAALGLKEGIAKSLQWTHNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSDWD PPSRWDDGIPGLIADYSLNAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDDDDSSNSTTSKNWD WSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVSGVAHSSAKVTISQMGRVLYETQ VPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTASMPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWGVA DGWSLYGGALADEHYQSAAMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAGYR FSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRPEQTNYNLMFSHYFNMGSIRNVS ISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSYGSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSVDGYLSHDG SLAKVDLSANYHEGEYRSAGIALQGGATLTAHGGALHRTQSMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVADIN NYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSYPPFGAEVKNDEQQQVGIVDDEG NVYLAGVNAGEHMTVFWEGSAQCEIVLPKPLPADLFSGLLLPCEQKGTAAPDSSAPEIKPVIQDQTRQVTPTEAPTSISA TQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 2e-145 | 43 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 6e-139 | 42 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 9e-138 | 42 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 7e-138 | 42 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 8e-139 | 42 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 1e-138 | 42 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 1e-138 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| EcSMS35_2496 | YP_001744540.1 | fimbrial usher protein | VFG1548 | Protein | 4e-139 | 42 |
| EcSMS35_2496 | YP_001744540.1 | fimbrial usher protein | VFG0884 | Protein | 3e-139 | 42 |
| EcSMS35_2496 | YP_001744540.1 | fimbrial usher protein | VFG0895 | Protein | 5e-139 | 42 |
