|
Name : fliP (EcSMS35_0245) Accession : YP_001742352.1 Strain : Escherichia coli SMS-3-5 Genome accession: NC_010498 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 259451 - 260203 bp Length : 753 bp Strand : - Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : ATGAAACGCCGCACTCAACTGGCGCTGGGCCTTGGGCTGCTGGCGCTTGCGCCGCTGGCGTTGGCCCAGGGTGGCGATAT TGCGCTACTTAACGTGGTGACCCACGGCAACACTCAGGAGTACAGCGTCAAAATTCAGGTACTGATTCTGATGACCCTCG TCGGTTTGCTGCCGACGATGGTGCTGATGATGACCTGCTTTACGCGCTTTATTATCGTGCTGTCGCTGCTGCGCCAGGCG CTGGGGCTGCAACAAACGCCGCCAAACCGCATTCTGATTGGTATTGCGCTCTCACTCACTATGCTGGTGATGCGCCCTGT CTGGCTCAATATTTACGACCACGCGGTAGTGCCGTTTGAAAACGATCAGATTACCCTGACCGATGCGTTAAGCACCGCCG CGACGCCGCTAAAACGCTTTATGCTGGCGCAGACCGACAAAAAAGCGATGGCGCAAATCATGACCATCGGCGGCGCGAAG GGCAATGCCGCCGACCAGGATCTCACGATTGTGGTGCCCGCCTATGTGTTGAGCGAGCTGAAAACCGCTTTCCAGATTGG CTTTATGATTTACATCCCGTTTCTGGTTATCGACCTGATTGTCGCAAGCGTACTGATGGCGATGGGGATGATGATGCTGT CGCCGCTGATTGTTTCGCTGCCCTTTAAACTGATGCTGTTTGTGCTGATCGACGGCTGGTCGCTGACCATCGGCACGCTC ACCACCAGCATTCGCGGGCTGGGGCTGGGCTGA Protein sequence : MKRRTQLALGLGLLALAPLALAQGGDIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQA LGLQQTPPNRILIGIALSLTMLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAK GNAADQDLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTL TTSIRGLGLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAT96200.1 | HrcR | Virulence | T-PAI | Protein | 4e-24 | 44 |
| hrcR | NP_791222.3 | type III secretion protein HrcR | Virulence | Hrp PAI | Protein | 1e-24 | 43 |
| hrcR | AAG33884.1 | HrcR | Virulence | Hrp PAI | Protein | 1e-24 | 43 |
| hrpW | AAB05075.1 | HrpW | Virulence | Hrp PAI | Protein | 2e-23 | 43 |
| hrcR | ABQ88359.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-23 | 43 |
| hrcR | AAT96146.1 | HrcR | Virulence | T-PAI | Protein | 4e-24 | 43 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 1e-27 | 42 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 1e-27 | 42 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 1e-27 | 42 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-30 | 41 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-30 | 41 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 2e-30 | 41 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 4e-28 | 41 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 6e-28 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_001742352.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 7e-58 | 58 |
| fliP | YP_001742352.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 1e-53 | 53 |
| fliP | YP_001742352.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 1e-50 | 51 |
| fliP | YP_001742352.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 3e-47 | 50 |
