Gene Information

Name : EcSMS35_0019 (EcSMS35_0019)
Accession : YP_001742136.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Unknown
Product : glycosyl hydrolase family protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1501
EC number : 3.2.1.-
Position : 22139 - 24178 bp
Length : 2040 bp
Strand : -
Note : identified by match to protein family HMM PF01055

DNA sequence :
ATGTCGTTTATTAAGCAAGATCCCCACCGTCTGGTCTGGCAACAAGACGATCGTTATCTCTGGATTGAAGCCTGGGGCGA
AAACAGCTTACGCGTGCGAAGCGGCCGCCATTTACCGGTAATGCGCAATGAAAACTGGGCGTTAACTCAGGATCCTGGCG
ATGCTGTCGCTCATATCACCTGGGATGAAAAACAGGCAACGCTGAGAAATGGTAAAATCACTGCCATCGTAAATCTTCAG
GGCCAGCTCTCTTTCTGGCGTAATGATGATAAATGCCTGCTGCAAGAGTTCTGGCGTCAACGTGGCGAAATTGGTGAAGA
TGAGTCAGCACACGGCCAATATGTGAGCGCTCTTAATCTACAGGCCCGTGAATTCAAGCCTATTCCTGGCGGGAAATTTA
CGATTAAGGCACGATTTGAAGCCAACGATGGCGAGAAACTCTTTGGCATGGGTCAGTATCAGCAACCAAACCTGGATTTA
AAAGGTTGCATGCTGGAGCTGGCACAACGTAACTCGCAGGCTTCTGTTCCCTTCCTGCTATCAAATCAGGGTTATGGTTT
TCTGTGGAATAACCCAGCAATTGGCCGCGTCACCTTCGCGCAAAACGGTACGGAATGGGTAGCAGAAGTCAGTGAACAAC
TGGACTACTGGATCACTGCGGGCGATACTCCGGCTGAGATCAGTGAAGCCTATGCACGAGTAACCGGTACGCCACCGATG
ATGCCTGATTACGCAATGGGGTTCTGGCAATGCAAGCTTCGCTATCGTAATCAACAAGAATTGTTAGAAGTCGCACGCGG
CTACAAGCAACGCAATCTTCCGATCTCGGTGATTGTCATCGATTTCTTCCATTGGCCGAATCAGGGTGACTGGATGTTCG
ATCTGCGTGACTGGCCCGATCCCGATGCGATGATCGCCGAATTAAAAGAAATGGGTATCGAACTGATGGTTTCATTCTGG
CCTACCGTAGATAACCGTACCGAGAGTTATCGGGAGATGAAAGAAAACGGCTGGCTAGTCCACACCGAGCGTGGTTTGCC
TATCAATATGGATTTCCTTGGCAACACCACGTTCTTTGATGCGACACATCCTGGCGCACGGGAATATGTCTGGAACAAAG
CCAAACGCAATTATTACGATAAAGGCGTGAAACTGTTCTGGCTGGATGAAGCCGAGCCAGAGTTCGGTGTTTACGATTAT
GACAACTATCGTTACTACGCAGGGCCAGTGCTGGAAGTCGGTAATATCTATCCGCGTATGTACGCCAAAACGTTCTTCGA
TGGCATGCAGGCAGCCGGAGAAAAGCAGGTGATCAATTTGCTACGCTGCGCCTGGGCCGGTAGTCAGAAATATGGTGCCC
TGGTGTGGTCAGGCGATATCCACTCCTCCTTCCGTTCTCTGCGCAATCAGTTTGCTGCGGGGCTGAACATGGGAATTGCC
GGGATCCCGTGGTGGACGACGGATATTGGCGGTTTCCACGGTGGCAACATACATGATCCAAAATTTCATGAACTGCTTAT
TCGCTGGTTCCAGTGGGGGGTATTCAGCCCAGTAATGCGTTTACATGGCAACCGCGACCCGCAAGTTTTGCCTGAACAAC
CCTATCGTGATGGCATCGCACAATGTCCGACTGGCGCGCCGAATGAAGTCTGGAGCTATGGTGAAGAAACCGGTGAAATT
CTCACTTCCTGCCTGCAGTTGCGTGAGAAGCTGAAACCTTATATCAGTAAAATTATGGCTGAGACGCACGAGAAGAACAG
CCCGGTAATGCGCACGATGTTCTTTGAGTTTCCAGACCAGGCAGAAAGCTGGAATATTTATGATCAGTACTGCTTTGGCC
CGGACCTTCTCGTTGCCCCTGTAATGCACGAAGGTACACGTTCACGTGATGTCTGGTTGCCTGCCGGAGAGACATGGATC
GATTTTTATACCCATGAACACTACGCGGGTGGGCAAAAGCTTCATCATTGCGCGCCGCTGCACCAGATACCGGTATTCAT
TCGTGAGAAAGGGAAATATCGCCAGTTATTACCCGTTTAA

Protein sequence :
MSFIKQDPHRLVWQQDDRYLWIEAWGENSLRVRSGRHLPVMRNENWALTQDPGDAVAHITWDEKQATLRNGKITAIVNLQ
GQLSFWRNDDKCLLQEFWRQRGEIGEDESAHGQYVSALNLQAREFKPIPGGKFTIKARFEANDGEKLFGMGQYQQPNLDL
KGCMLELAQRNSQASVPFLLSNQGYGFLWNNPAIGRVTFAQNGTEWVAEVSEQLDYWITAGDTPAEISEAYARVTGTPPM
MPDYAMGFWQCKLRYRNQQELLEVARGYKQRNLPISVIVIDFFHWPNQGDWMFDLRDWPDPDAMIAELKEMGIELMVSFW
PTVDNRTESYREMKENGWLVHTERGLPINMDFLGNTTFFDATHPGAREYVWNKAKRNYYDKGVKLFWLDEAEPEFGVYDY
DNYRYYAGPVLEVGNIYPRMYAKTFFDGMQAAGEKQVINLLRCAWAGSQKYGALVWSGDIHSSFRSLRNQFAAGLNMGIA
GIPWWTTDIGGFHGGNIHDPKFHELLIRWFQWGVFSPVMRLHGNRDPQVLPEQPYRDGIAQCPTGAPNEVWSYGEETGEI
LTSCLQLREKLKPYISKIMAETHEKNSPVMRTMFFEFPDQAESWNIYDQYCFGPDLLVAPVMHEGTRSRDVWLPAGETWI
DFYTHEHYAGGQKLHHCAPLHQIPVFIREKGKYRQLLPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0077 AAM75281.1 EF0077 Not tested Not named Protein 6e-155 47
EF0551 NP_814321.1 glycosyl hydrolase Not tested Not named Protein 8e-155 47