Gene Information

Name : EcSMS35_1889 (EcSMS35_1889)
Accession : YP_001743943.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Unknown
Product : IS911 transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1909030 - 1909569 bp
Length : 540 bp
Strand : +
Note : identified by match to protein family HMM PF00665

DNA sequence :
GTGATAACAGGTGTCTGGAAATATAGGGGCAAATCCATATGGTGCGGAGATATTACGTATATCTGGGCAGGAAATCGCTG
GTGCTATCTGGCGGTCGTCATGGATCTTTTTGCCCGCAGGGTTATCGGCTGGAGCCTGTCAGCGAATGCCGATACTGCAC
TGATAAGCAGTGCCTTGCGGATGGCGTATGAGGTGCGTGGTCAGCCGCGGGACGTCATGTTCCATAGCGACCAGGGAAGT
CAGTATACAGGACTGAAATATCAACAGCTTCTCTGGCGTTACAGGATAAAGCAAAGTGTCAGCCGACGGGGAAACTGCTG
GGATAACAGTCCTATGGAACGCTTCTTCCGCAGTCTGAAAACAGAATGGGTGCCGACGGATGGTTACGTAGGCAAGGACG
AGGCCCGGCAACAAATTAGCGGTTATATCCTGAATTATTACAATAGCGTCAGGCCTCACCATTACAACGGTGGGTTGACG
CCGGAAGAATCAGAGAACAGATACCGTTTTTACTGTAAAACCGTGGCCAATATTACTTGA

Protein sequence :
MITGVWKYRGKSIWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRMAYEVRGQPRDVMFHSDQGS
QYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKTEWVPTDGYVGKDEARQQISGYILNYYNSVRPHHYNGGLT
PEESENRYRFYCKTVANIT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-73 97
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-73 97
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 5e-74 97
Z5089 NP_290241.1 transposase Not tested LEE Protein 7e-74 97
unnamed CAI43898.1 putative transposase Not tested LEE Protein 2e-72 93
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 2e-72 93
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 4e-53 62
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 4e-53 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcSMS35_1889 YP_001743943.1 IS911 transposase orfB VFG0785 Protein 2e-74 97
EcSMS35_1889 YP_001743943.1 IS911 transposase orfB VFG1484 Protein 2e-53 62