Gene Information

Name : EcSMS35_0151 (EcSMS35_0151)
Accession : YP_001742268.1
Strain : Escherichia coli SMS-3-5
Genome accession: NC_010498
Putative virulence/resistance : Virulence
Product : putative chaperone protein EcpD
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 165865 - 166605 bp
Length : 741 bp
Strand : -
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGTTTTTAAACGCTAAACATACTGCAGCTGTATGCTTCGCCACTTGTATGAGCTTAAGCGCATCGGCAATAGCAGATAT
CGTAATTTCAGGAACTCGCGTAATTTATAAAAGTAATGAAAAAAGCGTTAATGTTCGGCTGGAAAATAAGGGGAATAATC
CGTTACTCGTTCAGAGCTGGCTGGATACTGGCGACGATAGTGCTGAACCAGGGAGTATTACTGTCCCATTTACCGCCACC
CCTCCTGTTTCGCGAATTGATGCCAAACGTGGTCAAACTATTAAATTGATGTACACGGCTTCCTCACCGCTGCCAAAAGA
CCGAGAAAGTGTTTTCTGGTTTAACGTACTCGAGGTTCCACCCAAACCTGACGCAGATAAAGTCGCCAACCAGAGTCTTC
TGCAATTGGCATTCCGTACGCGTATCAAATTATTTTATCGCCCGGAAGGTTTAAACGGACTGCCATCAGATGCACCCGCA
GCACTGAAATGGTCATGGGCAACCTCTGCTGGAAAAACTGCATTGCGCGTCGCAAATCCGACACCGTATCACGTCTCATT
CAGTAGTGGTGATTTAGTCGCCAATGGCAAAACCTACCCCCTGGATGTAAAAATGGTAGCCCCGCTGAGTGAAGAAACCT
TCGATATAAAAGGCATGAGTGGTAAAGCAAGTTCTGCCAAAGTGCATTTCTTCGCCATAAATGACTTTGGTGGTGCAATT
GAAGGCAATGCCAGCCTGTAA

Protein sequence : 
MFLNAKHTAAVCFATCMSLSASAIADIVISGTRVIYKSNEKSVNVRLENKGNNPLLVQSWLDTGDDSAEPGSITVPFTAT
PPVSRIDAKRGQTIKLMYTASSPLPKDRESVFWFNVLEVPPKPDADKVANQSLLQLAFRTRIKLFYRPEGLNGLPSDAPA
ALKWSWATSAGKTALRVANPTPYHVSFSSGDLVANGKTYPLDVKMVAPLSEETFDIKGMSGKASSAKVHFFAINDFGGAI
EGNASL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 3e-66 61
unnamed CAD33727.1 putative F17-like fimbrial chaperone Virulence PAI I 536 Protein 7e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcSMS35_0151 YP_001742268.1 putative chaperone protein EcpD VFG1145 Protein 5e-40 44
EcSMS35_0151 YP_001742268.1 putative chaperone protein EcpD VFG1468 Protein 4e-41 43
EcSMS35_0151 YP_001742268.1 putative chaperone protein EcpD VFG0007 Protein 1e-40 41